Locus 5702

Sequence ID 2R_DroMel_CAF1
Location 18,061,039 – 18,061,139
Length 100
Max. P 0.910030
window9131

overview

Window 1

Location 18,061,039 – 18,061,139
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 87.37
Mean single sequence MFE -18.98
Consensus MFE -16.46
Energy contribution -16.75
Covariance contribution 0.29
Combinations/Pair 1.06
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 1.07
SVM RNA-class probability 0.910030
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18061039 100 - 20766785
ACAAUCAACCAUCACCACCCACCGCAAUCGCCUGCCCGCGGCACGGAACCAAAACAAUUUGAAUUUUAAAUUCAGAGCCGCGCCGAGAAAUUUGCAACAU
.......................((((....((...((((((..(....).......(((((((.....)))))))))))))...))....))))..... ( -20.70)
>DroSec_CAF1 18724 93 - 1
ACAAUCAACCAUCACCACCCACCGCAAUCGCCUGCCCGCGGCACGGAACCAAAACAAUUUGAA-------UUCAGAGCCGAGCCGAGAAAUUUGCAACAU
.......................((((..((......))(((.(((...........((((..-------..)))).))).))).......))))..... ( -15.30)
>DroSim_CAF1 18776 100 - 1
ACAAUCAACCAUCACCACCCACCGCAAUCGCCUGCCCGCGGCACGGAACCAAAACAAUUUGAAUUUUAAAUUCAGAGCCGAGCCGAGAAAUUUGCAACAU
.......................((((..((......))(((.(((...........(((((((.....))))))).))).))).......))))..... ( -17.90)
>DroEre_CAF1 19067 95 - 1
AGCUCCACCCA---CCACCCACCGCAACCGCCUGCCCUCGGCACGGAGCCAAAACAAUUUGAAUUUUAAAUUCAGAGCCGAGCA--GAAAUUUGCAACAU
...........---.........((((....((((..(((((..(....).......(((((((.....)))))))))))))))--)....))))..... ( -21.50)
>DroYak_CAF1 19429 98 - 1
ACCGCCACCCAUUGCCACCCACCGCAACCGCCUGCCCUCGGCACGAAAGCAAAACAAUUUGAAUUUUAAAUUCAGAGCCGAGCU--GAAAUUUGCAUCAU
............(((........(((......))).((((((.(....)........(((((((.....)))))))))))))..--.......))).... ( -19.50)
>consensus
ACAAUCAACCAUCACCACCCACCGCAAUCGCCUGCCCGCGGCACGGAACCAAAACAAUUUGAAUUUUAAAUUCAGAGCCGAGCCGAGAAAUUUGCAACAU
.......................((((.........((((((..(....).......(((((((.....))))))))))))).........))))..... (-16.46 = -16.75 +   0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:12 2006