Locus 5701

Sequence ID 2R_DroMel_CAF1
Location 18,058,613 – 18,058,733
Length 120
Max. P 0.554568
window9130

overview

Window 0

Location 18,058,613 – 18,058,733
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.78
Mean single sequence MFE -48.70
Consensus MFE -18.77
Energy contribution -18.22
Covariance contribution -0.55
Combinations/Pair 1.41
Mean z-score -2.02
Structure conservation index 0.39
SVM decision value 0.04
SVM RNA-class probability 0.554568
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18058613 120 + 20766785
ACGCAACCGGAUCGAAAGUGGCCACAGAGAUUGGGUAAGGAACUGGGCUAUGCCGGCAAUUUGGAGAGCGAGAAGGAACUGUUGGAGUUCUUCCAGCAAAUUCCGGCCAGCAAGUUGGCC
.(((..((((((.(...((((((.(((...((.....))...))))))))).....).))))))...)))....((((.((((((((...))))))))..))))((((((....)))))) ( -40.50)
>DroPse_CAF1 16747 120 + 1
ACGGAGCCGGACAGACGGUGGGCCCACCGCCUGGUCAAGAAACUGGGCUACACGGGCCAGGAGGACGACGAGCAGGAACUGCUGAAGUUCCUGCAGGAGACGCCCGGCAGCAAGCUGGCC
.((..((((..(((.(((((....))))).)))..)......((((.((....)).))))..)).)..)).(((((((((.....))))))))).(....)..(((((.....))))).. ( -53.40)
>DroGri_CAF1 20747 120 + 1
ACCCACACAGAUCGCAACUGGGUUCAGCGUUUGGCCAAACGGAUGGGCUACAAAGCCGAUGAGGCGGACGAGAAGCAACUGUUGCAGUUCCUCAGGAAUGCACCCGCCACCCAGUUGGCG
............((((((((((((((.((((((......))))))((((....))))..)))(((((......(((....)))(((.((((...)))))))..))))))))))))).))) ( -42.80)
>DroEre_CAF1 16580 120 + 1
ACGCAACCGGACCGAAAGUGGCCUCAGAGAUUGGGCAAGGAACUGGGCUAUGCCGGCAAUUUGGAGAGCGAGAAGGAACUGCUGGAGUUCUUCCAGCAGAUCCCGGCCAGCAAGCUGGCC
.(((..((((((((...((((((.(((...((.....))...)))))))))..)))...)))))...)))....(((.(((((((((...))))))))).))).((((((....)))))) ( -50.20)
>DroYak_CAF1 16964 120 + 1
ACGCAACCGGAUCGCAAGUGGCCACAGAGAUUGGGCAAGGAACUGGGCUAUGCCGGCGAUUUGGAGAGCGAAAAGGAGCUGUUGGAGUUCUUCCAGCAGAUCCCAGCCAGCAAGUUGGCC
.(((..(((((((((..((((((.(((...((.....))...)))))))))....)))))))))...)))....(((.(((((((((...))))))))).)))..(((((....))))). ( -50.50)
>DroPer_CAF1 16771 120 + 1
ACGGAGCCGGACAGACGGUGGGCCCAGCGCCUGGUCAAGAAACUGGGCUACACGGGCCAGGAGGACGACGAGCAGGAACUGCUGAAGUUCCUGCAGGAGACGCCCGGCAGCAAGCUGGCC
.....((((......)))).((((.((((((..((......))..)))....(((((..............(((((((((.....))))))))).(....)))))).......))))))) ( -54.80)
>consensus
ACGCAACCGGACCGAAAGUGGCCACAGAGAUUGGGCAAGGAACUGGGCUACACCGGCAAUGAGGAGAACGAGAAGGAACUGCUGGAGUUCCUCCAGCAGACCCCCGCCAGCAAGCUGGCC
.................((((.(((((...((.....))...)))))))))...........((.((......(((((((.....)))))))........)))).(((((....))))). (-18.77 = -18.22 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:11 2006