Locus 5700

Sequence ID 2R_DroMel_CAF1
Location 18,055,885 – 18,055,979
Length 94
Max. P 0.935645
window9129

overview

Window 9

Location 18,055,885 – 18,055,979
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 77.97
Mean single sequence MFE -22.70
Consensus MFE -11.74
Energy contribution -13.27
Covariance contribution 1.53
Combinations/Pair 1.20
Mean z-score -2.45
Structure conservation index 0.52
SVM decision value 1.25
SVM RNA-class probability 0.935645
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18055885 94 - 20766785
GCGCCAUUGCGAUUGCAAACAGGCUACGCAUUUGUCUAAAUCCAACCACAGUGGAC---AGCUGGCUUGAACUUAUUAGCGAUACAAAAAAAGAUAG
.(((..((((....)))).(((((((.((...((((((.............)))))---)))))))))).........)))................ ( -20.22)
>DroSec_CAF1 13535 86 - 1
GCGCCAUUGCAAUUGCAAACAGGCUACGCAUUUGUCUAUAUCCAUCCACAGUGGACACCAGCUAGCUUGAACUUAUUAGCAAUACA-----------
((....((((....)))).(((((((.((...(((((((...........)))))))...))))))))).........))......----------- ( -22.90)
>DroSim_CAF1 13546 86 - 1
GCGCCAUUGCAAUUGCAAACAGGCUACGCAUUUGUCUAUAUCCAUCCACAGUGGACACCAGCUAGCUUGAACUUAUUAGCAAUACA-----------
((....((((....)))).(((((((.((...(((((((...........)))))))...))))))))).........))......----------- ( -22.90)
>DroEre_CAF1 13899 86 - 1
GCGCCAUUGCAAUUGCAAACAGGCUACGCAUUUGUCUAUAUCCAUCUACAGUGGGCACCCACUAGCCUGAACGCAUUUGCCAUACA-----------
........((((.(((...((((((..((....))..............(((((....)))))))))))...))).))))......----------- ( -24.40)
>DroYak_CAF1 14222 86 - 1
GCGCCAUUGCAAUUGCAAACAGGCUACGCAUUUGUCUAUAUCUAUCUACAGUGGGCACCCACUAGCUAGAACUCAGAUGCAAUACA-----------
..(((.((((....))))...)))...(((((((......((((.((..(((((....))))))).))))...)))))))......----------- ( -26.10)
>DroAna_CAF1 13209 86 - 1
GCGCCAUUGCAAUUUCACACUGGCUACGCAUU---CUAAAUCUAGAUACAGUGGAGAUUCCUUAAAGAGGGAUUAGAUGGAAUACAAAU--------
...(((((......((.(((((((...))..(---(((....))))..)))))))((((((((...)))))))).))))).........-------- ( -19.70)
>consensus
GCGCCAUUGCAAUUGCAAACAGGCUACGCAUUUGUCUAUAUCCAUCCACAGUGGACACCAGCUAGCUUGAACUUAUUAGCAAUACA___________
((....((((....)))).(((((((......(((((((...........))))))).....))))))).........))................. (-11.74 = -13.27 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:10 2006