| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,952,355 – 2,952,460 |
| Length | 105 |
| Max. P | 0.507157 |
| Location | 2,952,355 – 2,952,460 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -15.16 |
| Energy contribution | -14.83 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2952355 105 - 20766785 UAUCGAUUUAUU-UGGCGAUGAAUCGAUCAUUUUAGAUGUUAGCGGUCGAAUUUAAAUCUGCAUUC-------------UUUUUACCUUCGUGAAAAGAAAUGCAACAAAAGGCGACUU .(((((((((((-....)))))))))))................(((((..(((.....(((((((-------------(((((((....)))))))).))))))...)))..))))). ( -28.70) >DroSec_CAF1 11574 107 - 1 UAUCGAUUUAUUUUGGCGAUGAAUCGAUCAUUUUAGAAGUUAGCGGUCGAAUUUAAAUUCGCAUUAAGGAAAGUGAAUUAUUUUAUC------------AACGCAGAAACAGGCAACUG .(((((((((((.....)))))))))))..............(((..........(((((((..........)))))))........------------..))).....(((....))) ( -22.35) >DroSim_CAF1 11093 106 - 1 UAUCGAUUUAUU-UGGCGAUGAAUCGAUCAUUUUAGAAGUUAGCGGUCGAAUUUAAAUUCGCAUUAAGGAAAGUGAAUUAUUUUAUC------------AACGCAGAAACAGGCAACUA .(((((((((((-....)))))))))))..............(((..........(((((((..........)))))))........------------..)))......((....)). ( -20.25) >consensus UAUCGAUUUAUU_UGGCGAUGAAUCGAUCAUUUUAGAAGUUAGCGGUCGAAUUUAAAUUCGCAUUAAGGAAAGUGAAUUAUUUUAUC____________AACGCAGAAACAGGCAACUA .(((((((((((.....)))))))))))..............((((............))))...............................................(((....))) (-15.16 = -14.83 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:52 2006