Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,311,924 – 1,312,044 |
Length | 120 |
Max. P | 0.575552 |
Location | 1,311,924 – 1,312,044 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -45.67 |
Consensus MFE | -43.22 |
Energy contribution | -43.80 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.95 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1311924 120 - 20766785 UCUGCGCCUGCGCCUGGCUCAGCUGAGCGAAAGCUGAGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCCCCGACUUGGCCCGAUGAGUCCAUA ...(((....))).((((((((((.(((....))).)))((((((((....))))))))(((((((((.(........)))).))))))((((.((.......)).)))))))).))).. ( -46.60) >DroSec_CAF1 30324 120 - 1 UCUGCGCCUGCGCCCGGCUCAGCUGAGCGCAAGCUGAGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCGCCGACUUGGCCCGAUGAGUCCAUA ...(((....)))..(((((((((.(((....))).)))((((((((....))))))(((((((.(((((.((((...((.....)).))))))))).))))))).))..)))))).... ( -50.20) >DroSim_CAF1 9275 109 - 1 UCUGCGCCUGCGCCUGGCUCAGCUG-----------AGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCGCCGACUUGGCCCGAUGAGUCCAUA .....((((((((.((..((.((((-----------(.(((((((((....)))))))).).))))).....))..))))))).)))..((((..(((.....))))))).......... ( -40.20) >consensus UCUGCGCCUGCGCCUGGCUCAGCUGAGCG_AAGCUGAGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCGCCGACUUGGCCCGAUGAGUCCAUA ...(((....)))..(((((((((.(((....))).)))((((((((....))))))(((((((.(((((.((((...((.....)).))))))))).))))))).))..)))))).... (-43.22 = -43.80 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:03 2006