| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,053,669 – 18,053,768 |
| Length | 99 |
| Max. P | 0.657486 |
| Location | 18,053,669 – 18,053,768 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.89 |
| Mean single sequence MFE | -21.69 |
| Consensus MFE | -19.75 |
| Energy contribution | -20.00 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18053669 99 + 20766785 GAUUAACUAACUGGAAAAGGGCACAAAGUUGGUCGUUAUGUUUGCUGUUUUUUUUUUCGAUUUUUUUGUUGUUUUUUUCAGCAGACGCGGCGUCGUUAA ((((((((...((........))...))))))))((..(((((((((..........(((.....)))..........)))))))))..))........ ( -23.05) >DroSim_CAF1 11284 89 + 1 GAUUAACUAACUGGAAAAGGGCACAAAGUUGGUCGUUAUGUUUGCUGUUUUUUUU---------UUUGUUGU-UUUUUCAGCAGACGCGGCGUCGUUAA ((((((((...((........))...))))))))((..(((((((((........---------........-.....)))))))))..))........ ( -20.90) >DroEre_CAF1 11534 96 + 1 GAUUAACUAACUGGAAAAGGGCACAAAGUUGGUCGUUAUGUUUGCUGUGUUUUUUUGUU--GUUUUUUUUUU-UUUUUCAGCAGACGCGGCGUCGUUAA ((((((((...((........))...))))))))((..(((((((((............--...........-.....)))))))))..))........ ( -20.59) >DroYak_CAF1 11779 85 + 1 GAUUAACUAACUGGAAAAGGGCACAAAGUUGCUCGUUAUGUUUGCUGUUUU-------------UUUUUUUA-UUUUUCAGCAGACGCGGCGUCGUUAA ..(((((...........(((((......)))))((..(((((((((....-------------........-.....)))))))))..))...))))) ( -22.23) >consensus GAUUAACUAACUGGAAAAGGGCACAAAGUUGGUCGUUAUGUUUGCUGUUUUUUUU_________UUUGUUGU_UUUUUCAGCAGACGCGGCGUCGUUAA ((((((((...((........))...))))))))((..(((((((((...............................)))))))))..))........ (-19.75 = -20.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:09 2006