| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,040,456 – 18,040,547 |
| Length | 91 |
| Max. P | 0.765781 |
| Location | 18,040,456 – 18,040,547 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.59 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -13.17 |
| Energy contribution | -15.12 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18040456 91 + 20766785 GAAAACACUGGG-GGGUGGUGCCACUGCGCUGUAGGUG-----GAAAAACCAAGCCAAUUUUGUGGGGUAAAAAACCAUUCCGAGAGCGUACGAUAC------------------- ....((.((..(-((((((((((.(..((..((.((((-----(.....))..))).))..))..)))).....))))))))...)).)).......------------------- ( -22.60) >DroSec_CAF1 51042 91 + 1 GAAAAUACUGGG-GGGUGGUGCCACUGCGCUGUAGGUGGAGUGGAAAACCCAACCCAAUUUGGUCGGGUAAAAAACCAUUCCGAGAGCGAAC------------------------ ...........(-(((((((.(((((.(((.....))).)))))...((((.(((......))).)))).....))))))))..........------------------------ ( -33.10) >DroSim_CAF1 50077 115 + 1 GAAAAUACUGGG-GGGUGGUGCCACUGCGCUGUAGGUGGAGUGGAAAACCCAACCCAAUUUGGUGGGGUAAAAAACCAUUCCGAGAGCGAACGAUACGGAAUCCACCACAGNNNNN ........((((-..(.(((.(((((.(((.....))).)))))...))))..))))...(((((((((.....)))((((((....(....)...))))))))))))........ ( -42.20) >DroEre_CAF1 52879 92 + 1 GAAAACACUGGGGGGGUGGUGCCACUGCGCUGUAGGUG-----GAAAACCCAACCCAAUUUGGUGGGGUAAAAAACCAUUCCGAGAGCGUACGAUAC------------------- ....((.((...((((((((.(((((........))))-----)...((((.(((......))).)))).....))))))))...)).)).......------------------- ( -28.00) >DroYak_CAF1 51710 75 + 1 GGGUUUGCUGGU-----------------UGGUAGGUG----GGAAAACCCAACCCAAUUUGGUGGGGUAAA-AACCAUUCCGAGAGCGUACGAAAC------------------- ..((.((((..(-----------------(((...(((----(....((((.(((......))).))))...-..)))).)))).)))).)).....------------------- ( -21.60) >consensus GAAAAUACUGGG_GGGUGGUGCCACUGCGCUGUAGGUG____GGAAAACCCAACCCAAUUUGGUGGGGUAAAAAACCAUUCCGAGAGCGUACGAUAC___________________ .......((.((..((((((((....)))))................((((.(((......))).)))).....)))...)).))............................... (-13.17 = -15.12 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:02 2006