Locus 5694

Sequence ID 2R_DroMel_CAF1
Location 18,039,996 – 18,040,092
Length 96
Max. P 0.561852
window9119

overview

Window 9

Location 18,039,996 – 18,040,092
Length 96
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 87.37
Mean single sequence MFE -31.38
Consensus MFE -20.54
Energy contribution -20.06
Covariance contribution -0.48
Combinations/Pair 1.14
Mean z-score -2.12
Structure conservation index 0.65
SVM decision value 0.06
SVM RNA-class probability 0.561852
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18039996 96 - 20766785
GUAGUGGGCAGGGGUGUGGUUUG-AGGAGGGGGUU-------CGGGGUUCGGAGUUGAAAACCAGGCCCAGACACAGACAUAUUUGGCUUGUGGCAAGCUACGA
(((((..((..((((.((((((.-......((.((-------((.....)))).))..)))))).))))...(((((.((....))..)))))))..))))).. ( -32.40)
>DroSec_CAF1 50582 96 - 1
GUAGUGGGCAGGGGUGUGGUUUG-AGGAGGGGGUU-------CGGGGUUCGGAGUUGAAAACCGGGCCCAGACACAGACAUAUUUGGCUUGUGGCAAGCUACGA
(((((.(.((.((((((((((((-.(....(((((-------(((..((((....))))..))))))))...).))))).)))...)))).)).)..))))).. ( -35.80)
>DroSim_CAF1 49617 96 - 1
GUAGUGGGCAGGGGUGUGGUUUA-AGGAGGGUGUU-------CGGGGUUCGGAGUUGAAAACCAGGCCCAGACACAGACAUAUUUGGCUUGUGGCAAGCUACGA
(((((..((..((((.((((((.-.((......((-------((.....)))).))..)))))).))))...(((((.((....))..)))))))..))))).. ( -30.50)
>DroEre_CAF1 52418 86 - 1
G----------GGGUGUGGUUUG-AGAAGGGGGUU-------CGGGACUUGGAGUUGAAAACCAGGCCCAGACACAGACAUAUUUGGCUUGUGGCAAGCUACGA
.----------...(((((((((-...(.(((((.-------.(((.(((((.........))))))))..)).((((....)))).))).)..))))))))). ( -26.00)
>DroYak_CAF1 51259 94 - 1
G----------GGGUGUGGUUUGCAGGAGGGGGUUGGGUGUUGGGGGUUCGGAGUUGAAAACCAGGCCCAGACACAGACAUAUUUGGCUUGUGGCAAGCUACGA
.----------...((((((((((....(.((((..((((((..((((..((.........))..)))).)))))........)..)))).).)))))))))). ( -32.20)
>consensus
GUAGUGGGCAGGGGUGUGGUUUG_AGGAGGGGGUU_______CGGGGUUCGGAGUUGAAAACCAGGCCCAGACACAGACAUAUUUGGCUUGUGGCAAGCUACGA
...........((((.((((((......(((..((........))..)))........)))))).))))...............(((((((...)))))))... (-20.54 = -20.06 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:01 2006