Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,031,053 – 18,031,170 |
Length | 117 |
Max. P | 0.983570 |
Location | 18,031,053 – 18,031,170 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.74 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -27.78 |
Energy contribution | -27.78 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.20 |
Structure conservation index | 0.99 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18031053 117 + 20766785 UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC---UACUG ...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90) >DroSec_CAF1 44974 117 + 1 UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC---UACUG ...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90) >DroSim_CAF1 44026 117 + 1 UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC---UACUG ...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90) >DroEre_CAF1 46686 117 + 1 UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUUC---UACUG ...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90) >DroYak_CAF1 44918 117 + 1 UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUACC---UACUG ...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90) >DroAna_CAF1 39852 120 + 1 UUUGGGAUAUUUUUGGAUUUUGGUUUCGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCCGCCCACUC ..((((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))......(((.......)))..........))))... ( -28.10) >consensus UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC___UACUG ...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......)))................. (-27.78 = -27.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:53 2006