Locus 5690

Sequence ID 2R_DroMel_CAF1
Location 18,027,174 – 18,027,277
Length 103
Max. P 0.986187
window9110

overview

Window 0

Location 18,027,174 – 18,027,277
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 89.03
Mean single sequence MFE -36.28
Consensus MFE -28.62
Energy contribution -29.90
Covariance contribution 1.28
Combinations/Pair 1.07
Mean z-score -2.59
Structure conservation index 0.79
SVM decision value 2.03
SVM RNA-class probability 0.986187
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18027174 103 - 20766785
CCUCACGGACUUGCAAUUUCGCAGGAAGUGUGGGAAAUCAAGCGAGGAAAGUGGGGAGCCAAAUCGGAAGGGGGGUGCGGAUUCGGAGCUGGAGCUCGGGGAA
((((((...(((((.(((((.((.......)).)))))...)))))....)))))).(((...((....))..))).....(((.((((....)))).))).. ( -34.60)
>DroSec_CAF1 41112 103 - 1
CCUCACGGACUCGCAAUUUCGCAGGAAGUGUGGGAAAUCAAGCGAGGAAAGUGGGGAGCCAAAUCGGAAGGGGAAUGCGGAAACGGAGCGGGAGCUCCGGGAA
((((((...(((((.(((((.((.......)).)))))...)))))....)))))).((....((....)).....)).....((((((....)))))).... ( -39.50)
>DroSim_CAF1 40114 103 - 1
CCUCACGGACUCGCAAUUUCGCAGGAAGUGUGGGAAAUCAAGCGAGGAAAGUGGGGAGCCAAAUCGGAAGGGGGAUGCGGAUACGGAGCGGGAGCUCCGGGAA
((((((...(((((.(((((.((.......)).)))))...)))))....))))))..((...((....)).)).........((((((....)))))).... ( -40.10)
>DroEre_CAF1 42717 103 - 1
CCUCACGGACUCGCAAUUUCGCAGGAAGUGUGGGAAAUCAAGCGAGGAAAGUGGGGAGCCAAAUCGGAAGGCGGACUCGGAUCCGUAGCUGGAGCUCCGGGAA
((((((...(((((.(((((.((.......)).)))))...)))))....)))))).(((.........)))...((((((((((....))))..)))))).. ( -37.10)
>DroYak_CAF1 40934 92 - 1
CCUCACGGACUCGCAAUCUCGCAGGAAGUGUGGGAAAUCAAGCGAGGAAAGUGCGGAGCCAAAACGGAAGGGGAGC-----------ACUGGAGCUCUGGGAA
((.(((...(((((..(((((((.....)))))))......)))))....))).))..((....(....).(((((-----------......)))))))... ( -30.10)
>consensus
CCUCACGGACUCGCAAUUUCGCAGGAAGUGUGGGAAAUCAAGCGAGGAAAGUGGGGAGCCAAAUCGGAAGGGGGAUGCGGAUACGGAGCUGGAGCUCCGGGAA
((((((...(((((..(((((((.....)))))))......)))))....))))))..((....(....).............((((((....)))))))).. (-28.62 = -29.90 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:52 2006