Locus 569

Sequence ID 2R_DroMel_CAF1
Location 2,945,852 – 2,945,972
Length 120
Max. P 0.857783
window1043

overview

Window 3

Location 2,945,852 – 2,945,972
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.26
Mean single sequence MFE -49.42
Consensus MFE -44.91
Energy contribution -45.19
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.42
Structure conservation index 0.91
SVM decision value 0.81
SVM RNA-class probability 0.857783
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2945852 120 + 20766785
ACCGCCGCCGUGGCCUAUUCGCACCUGCACAGCGUGAUGGGCGCCAUGCCCAUGACCGCCAUGUACGACAUGGGCGAGUACCAGCACUUAUGAUUCUAGUUGGAGGCGGCCGCUGCCGCC
...((.((.(((((((((((((.........(.((.((((((.....)))))).))).(((((.....))))))))))))(((((.............)))))....)))))).)).)). ( -50.52)
>DroPse_CAF1 24969 117 + 1
UCCGCUGCCGUUGCCUACUCCCACCUGCAUAGUGUGAUGGGCGCCAUGCCCAUGAC---CAUGUACGACAUGGGGGAGUAUCAGCACUUAUGAUUCUAGUUGGAGGCGGCUGCUGCCGCU
(((((((..((((..(((((((.(((((((.(.((.((((((.....)))))).))---))))))......))))))))).)))).(....)....))).))))((((((....)))))) ( -46.00)
>DroEre_CAF1 11730 120 + 1
ACCGCCGCCGUGGCCUACUCGCACCUGCACAGCGUGAUGGGCGCCAUGCCCAUGACCGCCAUGUACGACAUGGGCGAGUACCAGCACUUAUGAUUCUAGUUGGAGGCGGCCGCUGCCGCC
...((.((.(((((((((((((.........(.((.((((((.....)))))).))).(((((.....))))))))))))(((((.............)))))....)))))).)).)). ( -52.82)
>DroYak_CAF1 9849 120 + 1
ACCGCCGCCGUGGCCUAUUCGCACCUGCACAGCGUGAUGGGCGCCAUGCCCAUGACCGCCAUGUACGACAUGGGCGAGUACCAGCACUUAUGAUUCUAGUUGGAGGCGGCCGCUGCCGCC
...((.((.(((((((((((((.........(.((.((((((.....)))))).))).(((((.....))))))))))))(((((.............)))))....)))))).)).)). ( -50.52)
>DroAna_CAF1 24995 120 + 1
UCCGCCGCCGUGGCCUACUCGCACCUGCACAGCGUAAUGGGGGCGAUGCCCAUGUCCGCGAUGUACGACAUGGGCGAGUACCAGCACUUAUGAUUCUAGUUGGAGGCGGCCGCUGCCGCC
...((.((.(((((((((((.(.(((.((........)).))).)..(((((((((..........))))))))))))))(((((.............)))))....)))))).)).)). ( -48.92)
>DroPer_CAF1 25003 117 + 1
UCCGCUGCCGUCGCCUACUCCCACCUGCAUAGUGUGAUGGGCGCCAUGCCCAUGAC---CAUGUACGACAUGGGGGAGUAUCAGCACUUAUGAUUCUAGUUGGAGGCGGCUGCUGCCGCU
...((.((.(((((((((((((.(((((((.(.((.((((((.....)))))).))---))))))......)))))))).(((((.............)))))))))))).)).)).... ( -47.72)
>consensus
ACCGCCGCCGUGGCCUACUCGCACCUGCACAGCGUGAUGGGCGCCAUGCCCAUGACCGCCAUGUACGACAUGGGCGAGUACCAGCACUUAUGAUUCUAGUUGGAGGCGGCCGCUGCCGCC
...((.((.(((((((((((((...........((.((((((.....)))))).))..(((((.....))))))))))))(((((.............)))))....)))))).)).)). (-44.91 = -45.19 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:51 2006