Locus 5689

Sequence ID 2R_DroMel_CAF1
Location 18,026,020 – 18,026,121
Length 101
Max. P 0.772217
window9109

overview

Window 9

Location 18,026,020 – 18,026,121
Length 101
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 90.17
Mean single sequence MFE -21.56
Consensus MFE -15.71
Energy contribution -15.59
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -2.14
Structure conservation index 0.73
SVM decision value 0.53
SVM RNA-class probability 0.772217
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18026020 101 + 20766785
AGUGCAUCACAAAAUU--GACCACUGAUACCAAUGUAAUGCAAUUGCAGCUAACGAACUGAACUC-----AAAAGUUCGAAAUUCAGUGAAUGCUAAAAUAAUUGCCA
.(.((((((......)--)).((((((...........(((....))).....((((((......-----...))))))....))))))..............)))). ( -19.10)
>DroSec_CAF1 39972 101 + 1
AGUGCAUCAUAAAAUU--GACCACUGAUACCAAAGUAAUGCAAUUGCAGCUAACGAACUGAACUC-----AAAAGUUCGAAAUUCAGUGAAUGCUGAAAUAAUUGCCA
((((..(((......)--)).))))..............(((((((.......((((((......-----...))))))...((((((....)))))).))))))).. ( -22.00)
>DroSim_CAF1 38989 101 + 1
AGUGCAUCAUAAGAUU--GACCACUGAUACCAAAGUAAUGCAAUUGCAGCUAACGAACUGAACUC-----AAAAGUUCGAAAUUCAGUGAAUGCUGAAAUAAUUGCCA
((((..(((......)--)).))))..............(((((((.......((((((......-----...))))))...((((((....)))))).))))))).. ( -22.00)
>DroEre_CAF1 41547 101 + 1
AGUGCAUCCCAAAAUGACAAUCAGUGGU--CAAAGUAAUGCAAUUGCAGCUAACGAACUGAACUG-----AAAAGUUCGAAAUUCAGUGAAUGCUGAAAUAAUUGCCA
..(((((..(....((((........))--))..)..)))))...((((.........((((((.-----...))))))...((((((....))))))....)))).. ( -22.60)
>DroYak_CAF1 39692 106 + 1
ACUGCAGCCCAAAAUU--GACCACUGAUACCAAAGUAAUGCAAUUGCAGCUAACGAACUGAACUGAACGGAAAAGUUUGAAAUUCAGUGAAUGCAGAAAUAAUUGCCA
.(((((...((....)--)..((((((......(((..(((....))))))..((((((...((....))...))))))....))))))..)))))............ ( -22.10)
>consensus
AGUGCAUCACAAAAUU__GACCACUGAUACCAAAGUAAUGCAAUUGCAGCUAACGAACUGAACUC_____AAAAGUUCGAAAUUCAGUGAAUGCUGAAAUAAUUGCCA
...(((...............((((((...........(((....))).....((((((..............))))))....))))))..............))).. (-15.71 = -15.59 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:51 2006