Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,024,425 – 18,024,528 |
Length | 103 |
Max. P | 0.898541 |
Location | 18,024,425 – 18,024,528 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 96.31 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -24.22 |
Energy contribution | -24.22 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -1.62 |
Structure conservation index | 0.87 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18024425 103 + 20766785 ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUGAGCAAAUUAUGUACAGAGA ((((((((((((...))))).....)))))))......(((((((((.((.....)).)))))))))......(((((((..(((.....)))..))))))). ( -32.50) >DroSec_CAF1 38378 103 + 1 ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUUAGCAAAUUAGGUACAGAGA ....((((((((...))))))))..((((.........(((((((((.((.....)).)))))))))...(.((((..(((....)))....)))).).)))) ( -26.60) >DroSim_CAF1 37397 103 + 1 ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUUAGCAAAUUAGGUACAGAGA ....((((((((...))))))))..((((.........(((((((((.((.....)).)))))))))...(.((((..(((....)))....)))).).)))) ( -26.60) >DroEre_CAF1 39975 103 + 1 ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUGCGCUAGGCAGGAGUAGCCAUGAAAGGGCUUUGUGUGUUAGCAAAUUAGGUAAAGGGA ((((((((((((...))))).....)))))))...(((..(((((..(((((.((.(...((((.......))))...).))))))).)))))..)))..... ( -25.80) >DroYak_CAF1 38045 103 + 1 ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGAAGCCAUGAAAGGGCUUUGUGUGUUAGCAAAUUAGGUACAGGGA .(((((((((((...)))))))).((((..((((.........))))(((((.((.(.((((((.......)))))).).))))))).....)))).)))... ( -27.80) >consensus ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUUAGCAAAUUAGGUACAGAGA ....((((((((...))))))))..((((.((...((.(((((((((.((.....)).))))))))).))..))(((((......))))).........)))) (-24.22 = -24.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:50 2006