| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,023,581 – 18,023,690 |
| Length | 109 |
| Max. P | 0.510383 |
| Location | 18,023,581 – 18,023,690 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.23 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -16.46 |
| Energy contribution | -16.13 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18023581 109 + 20766785 ACAGCAGAGGGCAGCAGGAUAUACGCAAACUGAGUUGUAGUAAUAUAUAUGUGCCUGUCCAAAAAUUCACUUCACUUUCUAGUCUGAACGCUGCUGUUUUUUAGAAC----------UU (((((((.(..(((..(((((..((((........((((....))))..))))..))))).............(((....))))))..).)))))))..........----------.. ( -24.00) >DroSec_CAF1 37566 107 + 1 AUAGCAGAGGGCAGCAGGAUAUAACCAAACUGAGUUGUAGUAAAA--UAUGUGCCUGUCCAAAAAUGCCCUUCACUUUCUACUUCGCACAUUGUUGUUUAUUAGAAU----------UU ..((..(((((((((((((((((.....((((.....))))....--))))).))))).......)))))))..))(((((.(..(((......)))..).))))).----------.. ( -22.31) >DroSim_CAF1 36597 105 + 1 ACAGCAGAGGGCAGCAGGAUAUACCCAAACUGAGUUGUAGUAAAA--UAUGUGCCUGUCCAAAAAUGACCUUCA------------CACACUGUUUUUUAUUAGAAAAAAACAGUAGUG ......(((((((((((((((((.....((((.....))))....--))))).))))).......)).))))).------------(((((((((((((......)))))))))).))) ( -26.81) >consensus ACAGCAGAGGGCAGCAGGAUAUACCCAAACUGAGUUGUAGUAAAA__UAUGUGCCUGUCCAAAAAUGCCCUUCACUUUCUA_U__GCACACUGUUGUUUAUUAGAAA__________UU (((((((.((((((..(.(((((.....((((.....))))......))))).))))))).....(((.................)))..)))))))...................... (-16.46 = -16.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:49 2006