| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,023,414 – 18,023,506 |
| Length | 92 |
| Max. P | 0.697161 |
| Location | 18,023,414 – 18,023,506 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 82.71 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -22.38 |
| Energy contribution | -23.93 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18023414 92 + 20766785 ----UUGUUGUUAUUUCUG------GCUCUGUUUGUGUGCACACACACUUGCACACAGAGC-AACGAUUACGAUAACGACGUC-GCUGUGACGGCGGCAGCGCA ----..(((((((((((..------(((((((....(((((........))))))))))))-...))....)))))))))(((-((((...)))))))...... ( -34.20) >DroSec_CAF1 37399 92 + 1 ----UUGUUGUUAUUUCAG------GCUCUGUUUGUGUGCACACACACUUGCACACGGAGC-AACGAUUACGAUAACGACGUC-GCUGUGACGGCGGCAGCGCA ----..(((((((((((..------(((((....(((((((........))))))))))))-...))....)))))))))(((-((((...)))))))...... ( -34.20) >DroSim_CAF1 36430 92 + 1 ----UUGUUGUUAUUUCAG------GCUCUGUUUGUGUGCACACACACUUGCACACGGAGC-AACGAUUACGAUAACGACGUC-GCUGUGACGGCGGCAGCGCA ----..(((((((((((..------(((((....(((((((........))))))))))))-...))....)))))))))(((-((((...)))))))...... ( -34.20) >DroEre_CAF1 38936 92 + 1 ----UUGUUGUUAUUUCAG------GCUCUGUUUGUGUGCAUACAUACUUGCACACGGAGC-AACGAUUACGAUAACGACGUC-GCUGUGACGGCGGCAGCGCA ----..(((((((((((..------(((((....(((((((........))))))))))))-...))....)))))))))(((-((((...)))))))...... ( -35.10) >DroYak_CAF1 36824 92 + 1 ----UUGUUGUUAUUUCGG------GCUCUGUUUGUGUGCACACACACUUGCACACGGAGC-AACGAUUACGAUAAGGACGUC-GCUGUGACGCCGGCAGCGCA ----..(((.((((((((.------(((((....(((((((........))))))))))))-..)))....))))).)))(.(-(((((.......))))))). ( -31.80) >DroMoj_CAF1 49769 92 + 1 GCCAUUGUUGUUGUUUCAGAGAUCUGCUCUGUUUAUGUACACAAA---AUGCGCGCAGUGCCCACGGCUA---------UGUCGGCUAUGACGACGACUACGAC ......(((((((((.(((((.....)))))..............---..((.((((..(((...)))..---------)).))))...)))))))))...... ( -22.20) >consensus ____UUGUUGUUAUUUCAG______GCUCUGUUUGUGUGCACACACACUUGCACACGGAGC_AACGAUUACGAUAACGACGUC_GCUGUGACGGCGGCAGCGCA ......(((((((((..........(((((((....(((((........))))))))))))..........)))))))))....(((((.......)))))... (-22.38 = -23.93 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:48 2006