Locus 5683

Sequence ID 2R_DroMel_CAF1
Location 18,021,344 – 18,021,449
Length 105
Max. P 0.997718
window9100 window9101

overview

Window 0

Location 18,021,344 – 18,021,449
Length 105
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 94.70
Mean single sequence MFE -21.65
Consensus MFE -18.79
Energy contribution -18.99
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.87
SVM decision value 0.30
SVM RNA-class probability 0.677953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18021344 105 + 20766785
CACACGAUUCUCACGCCUCAAGUGGCGGCCAUAAUUACUGCAAUC----UCGUAAUCGUAAUCACAACUGUAAUUGUAAUUCAAUUCGCUCGGCCGCCUCCG-CACUCAA-
..............((.....(.(((((((...((((((((....----..)))...))))).......(((((((.....))))).))..))))))).).)-)......- ( -21.30)
>DroSec_CAF1 35230 105 + 1
CACAUGAUUCUCACGCCUUAAGUGGCGGCCAUAAUUACUGCAAUC----UCGUAAUCGUAAUCACAACUGUAAUUGUAAUUCAAUUCGCUCGGCCGCCUCCG-CACUCAA-
..............((.....(.(((((((...((((((((....----..)))...))))).......(((((((.....))))).))..))))))).).)-)......- ( -21.30)
>DroSim_CAF1 34260 105 + 1
CACACGAUUCUCACGCCUCAAGUGGCGGCCAUAAUUACUGCAAUC----UCGUAAUCGUAAUCACAACUGUAAUUGUAAUUCAAUUCGCUCGGCCGCCUCCG-CACUCAA-
..............((.....(.(((((((...((((((((....----..)))...))))).......(((((((.....))))).))..))))))).).)-)......- ( -21.30)
>DroEre_CAF1 36755 105 + 1
CACACGAUUCUCACGCCUCAAGUGGCGGCCAUAAUUACUGCAAUC----UCGUAAUCGUAAUCACAACUGUAAUUGUAAUUCAAUUCGCUCGGCCGCCUCCG-CACUCAA-
..............((.....(.(((((((...((((((((....----..)))...))))).......(((((((.....))))).))..))))))).).)-)......- ( -21.30)
>DroYak_CAF1 34710 105 + 1
CACACGAUUCUCACGCCUCAAGUGGCGGCCAUAAUUACUGCAAUC----UCGUAAUCGUAAUCACAACUGUAAUUGUAAUUCAAUUCGCUCGGCCGCCUCCG-CACUUAA-
..............((.....(.(((((((...((((((((....----..)))...))))).......(((((((.....))))).))..))))))).).)-)......- ( -21.30)
>DroAna_CAF1 29815 111 + 1
CACACAAUUCUCACGCCUCAAGUGGCGGCCAUAAUUACUGCAAUCGUAAUCGUUGUCGUAAUCGCAACUGUAAUUGUAAUUCAAUUCGCUUGGCCACCUCCUCCACUCACU
..............(((......)))(((((..(((((.((((.((....)))))).))))).......(((((((.....))))).)).)))))................ ( -23.40)
>consensus
CACACGAUUCUCACGCCUCAAGUGGCGGCCAUAAUUACUGCAAUC____UCGUAAUCGUAAUCACAACUGUAAUUGUAAUUCAAUUCGCUCGGCCGCCUCCG_CACUCAA_
.....................(.((((((((..(((((.............)))))..)..........(((((((.....))))).))..))))))).)........... (-18.79 = -18.99 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

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Window 1

Location 18,021,344 – 18,021,449
Length 105
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 94.70
Mean single sequence MFE -33.67
Consensus MFE -31.04
Energy contribution -31.18
Covariance contribution 0.14
Combinations/Pair 1.11
Mean z-score -2.17
Structure conservation index 0.92
SVM decision value 2.92
SVM RNA-class probability 0.997718
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18021344 105 - 20766785
-UUGAGUG-CGGAGGCGGCCGAGCGAAUUGAAUUACAAUUACAGUUGUGAUUACGAUUACGA----GAUUGCAGUAAUUAUGGCCGCCACUUGAGGCGUGAGAAUCGUGUG
-....(..-(...((((((((..((((((((((((((((....))))))))).))))).)).----(((((...))))).))))))))....((..(....)..)))..). ( -34.10)
>DroSec_CAF1 35230 105 - 1
-UUGAGUG-CGGAGGCGGCCGAGCGAAUUGAAUUACAAUUACAGUUGUGAUUACGAUUACGA----GAUUGCAGUAAUUAUGGCCGCCACUUAAGGCGUGAGAAUCAUGUG
-((((((.-....((((((((..((((((((((((((((....))))))))).))))).)).----(((((...))))).)))))))))))))).(((((.....))))). ( -34.40)
>DroSim_CAF1 34260 105 - 1
-UUGAGUG-CGGAGGCGGCCGAGCGAAUUGAAUUACAAUUACAGUUGUGAUUACGAUUACGA----GAUUGCAGUAAUUAUGGCCGCCACUUGAGGCGUGAGAAUCGUGUG
-....(..-(...((((((((..((((((((((((((((....))))))))).))))).)).----(((((...))))).))))))))....((..(....)..)))..). ( -34.10)
>DroEre_CAF1 36755 105 - 1
-UUGAGUG-CGGAGGCGGCCGAGCGAAUUGAAUUACAAUUACAGUUGUGAUUACGAUUACGA----GAUUGCAGUAAUUAUGGCCGCCACUUGAGGCGUGAGAAUCGUGUG
-....(..-(...((((((((..((((((((((((((((....))))))))).))))).)).----(((((...))))).))))))))....((..(....)..)))..). ( -34.10)
>DroYak_CAF1 34710 105 - 1
-UUAAGUG-CGGAGGCGGCCGAGCGAAUUGAAUUACAAUUACAGUUGUGAUUACGAUUACGA----GAUUGCAGUAAUUAUGGCCGCCACUUGAGGCGUGAGAAUCGUGUG
-....(..-(...((((((((..((((((((((((((((....))))))))).))))).)).----(((((...))))).))))))))....((..(....)..)))..). ( -34.10)
>DroAna_CAF1 29815 111 - 1
AGUGAGUGGAGGAGGUGGCCAAGCGAAUUGAAUUACAAUUACAGUUGCGAUUACGACAACGAUUACGAUUGCAGUAAUUAUGGCCGCCACUUGAGGCGUGAGAAUUGUGUG
........(((..((((((((.((.((((((((....))).)))))))((((((..(((((....)).)))..)))))).)))))))).)))((..(....)..))..... ( -31.20)
>consensus
_UUGAGUG_CGGAGGCGGCCGAGCGAAUUGAAUUACAAUUACAGUUGUGAUUACGAUUACGA____GAUUGCAGUAAUUAUGGCCGCCACUUGAGGCGUGAGAAUCGUGUG
.............((((((((..((((((((((((((((....))))))))).))))).)).....(((((...))))).))))))))((.(((..(....)..))).)). (-31.04 = -31.18 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:44 2006