Locus 5682

Sequence ID 2R_DroMel_CAF1
Location 18,021,024 – 18,021,143
Length 119
Max. P 0.500000
window9099

overview

Window 9

Location 18,021,024 – 18,021,143
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 99.66
Mean single sequence MFE -13.06
Consensus MFE -13.06
Energy contribution -13.06
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 1.00
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18021024 119 - 20766785
GAAGGCAAAAGUUUUCGGCGUGGAAUUUAAAUUGGAAAAGUAAAAUGAAAAGAAAGGCGCUCGAGUAAAAGUUAAACAAAGUGCAAAGUAAAUAUUAAAUUAAGAAAGCGAAUAAGAAA
((((((....)))))).((.(..(((((((.((....)).................(((((...((.........))..)))))..........)))))))..)...)).......... ( -12.90)
>DroSec_CAF1 34910 119 - 1
GAAGGCAAAAGUUUUCGGCGUGGAAUUUAAAUUGGAAAAGUAAAAUGAAAAGAAAAGCGCUCGAGUAAAAGUUAAACAAAGUGCAAAGUAAAUAUUAAAUUAAGAAAGCGAAUAAGAAA
((((((....)))))).((.(..(((((((.((....)).................(((((...((.........))..)))))..........)))))))..)...)).......... ( -13.10)
>DroSim_CAF1 33941 119 - 1
GAAGGCAAAAGUUUUCGGCGUGGAAUUUAAAUUGGAAAAGUAAAAUGAAAAGAAAAGCGCUCGAGUAAAAGUUAAACAAAGUGCAAAGUAAAUAUUAAAUUAAGAAAGCGAAUAAGAAA
((((((....)))))).((.(..(((((((.((....)).................(((((...((.........))..)))))..........)))))))..)...)).......... ( -13.10)
>DroEre_CAF1 36424 119 - 1
GAAGGCAAAAGUUUUCGGCGUGGAAUUUAAAUUGGAAAAGUAAAAUGAAAAGAAAAGCGCUCGAGUAAAAGUUAAACAAAGUGCAAAGUAAAUAUUAAAUUAAGAAAGCGAAUAAGAAA
((((((....)))))).((.(..(((((((.((....)).................(((((...((.........))..)))))..........)))))))..)...)).......... ( -13.10)
>DroYak_CAF1 34395 119 - 1
GAAGGCAAAAGUUUUCGGCGUGGAAUUUAAAUUGGAAAAGUAAAAUGAAAAGAAAAGCGCUCGAGUAAAAGUUAAACAAAGUGCAAAGUAAAUAUUAAAUUAAGAAAGCGAAUAAGAAA
((((((....)))))).((.(..(((((((.((....)).................(((((...((.........))..)))))..........)))))))..)...)).......... ( -13.10)
>consensus
GAAGGCAAAAGUUUUCGGCGUGGAAUUUAAAUUGGAAAAGUAAAAUGAAAAGAAAAGCGCUCGAGUAAAAGUUAAACAAAGUGCAAAGUAAAUAUUAAAUUAAGAAAGCGAAUAAGAAA
((((((....)))))).((.(..(((((((.((....)).................(((((...((.........))..)))))..........)))))))..)...)).......... (-13.06 = -13.06 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:42 2006