Locus 5681

Sequence ID 2R_DroMel_CAF1
Location 18,017,718 – 18,017,812
Length 94
Max. P 0.715754
window9098

overview

Window 8

Location 18,017,718 – 18,017,812
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 90.78
Mean single sequence MFE -23.19
Consensus MFE -20.01
Energy contribution -20.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 0.39
SVM RNA-class probability 0.715754
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18017718 94 - 20766785
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGCACAAC---------CUCCUCUAUAACUCCUGCCCUGC----
.(((((((.((((.(((((((((.....)))))))))))))...))).))))..........(((((....---------...............)))))...---- ( -23.21)
>DroSec_CAF1 31631 94 - 1
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGCACAAC---------CUCCUCUAUAACUCCUGCCCUGC----
.(((((((.((((.(((((((((.....)))))))))))))...))).))))..........(((((....---------...............)))))...---- ( -23.21)
>DroSim_CAF1 30630 94 - 1
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGCACAAC---------CUCCUCUAUAACUCCUGCCCUGC----
.(((((((.((((.(((((((((.....)))))))))))))...))).))))..........(((((....---------...............)))))...---- ( -23.21)
>DroEre_CAF1 33174 94 - 1
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGCACAAC---------CUCCUCUAUAACUCCUGCCCUCC----
.(((((((.((((.(((((((((.....)))))))))))))...))).))))..........(((((....---------...............)))))...---- ( -23.21)
>DroYak_CAF1 31003 98 - 1
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGCACAAC---------CUCCUCUAUAACUCCUGCCCCUUUUCA
.(((((((.((((.(((((((((.....)))))))))))))...))).))))..........(((((....---------...............)))))....... ( -22.81)
>DroAna_CAF1 26592 100 - 1
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGACCAACUCCGCCCCGCUCCUAUUU---GCCUGAACUUC----
((((.(((.((((.(((((((((.....)))))))))))))))).......(((.......((((...........))))........)---)))))).....---- ( -23.46)
>consensus
UCAGAGUCAUUAACAUGCUGUUGUCGUUUGGCAGCAUUUAGGACGACAUCUGCACCUUUUUCGGGCACAAC_________CUCCUCUAUAACUCCUGCCCUGC____
.(((((((.((((.(((((((((.....)))))))))))))...))).))))..........(((((............................)))))....... (-20.01 = -20.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:40 2006