Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,938,216 – 2,938,324 |
Length | 108 |
Max. P | 0.855199 |
Location | 2,938,216 – 2,938,324 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -15.25 |
Energy contribution | -16.00 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.78 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.855199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2938216 108 - 20766785 AAAUUAAUAUAUUAUUUUUUGCGGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUCGUAUGUGCAGAUGCCCCCCUCCCCCUG .................((((((((((...))))((((((((....))))).)))..))))))....((((..(((((....)))))....))))............. ( -24.70) >DroSec_CAF1 2111 81 - 1 AAAUUAAUAUAUUAUUUUUUGCGGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUC--------------------------- .......((((((.(((((((((((((...))))((((((((....))))).)))..)))))).))).....))))))...--------------------------- ( -18.90) >DroSim_CAF1 1270 81 - 1 AAAUUAAUAUAUUAUUUUUUGCCGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUC--------------------------- .......((((((.((((((((.((((...))))((((((((....))))).)))...))))).))).....))))))...--------------------------- ( -16.50) >DroYak_CAF1 2381 81 - 1 AAAUUAAUAUAUUAUAUUGUGCGGUGCCUUGCACGCGUUGACACUUGUCACAUGUAUCGCAAAUAGAGCAUAAGUAUAUGC--------------------------- ..............((((.((((((((...))))((((((((....)))).))))..))))))))..(((((....)))))--------------------------- ( -18.00) >consensus AAAUUAAUAUAUUAUUUUUUGCGGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUC___________________________ .................((((((((((...))))((((((((....))))).)))..))))))............................................. (-15.25 = -16.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:50 2006