Locus 5679

Sequence ID 2R_DroMel_CAF1
Location 18,015,051 – 18,015,157
Length 106
Max. P 0.896118
window9095

overview

Window 5

Location 18,015,051 – 18,015,157
Length 106
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -25.80
Consensus MFE -25.64
Energy contribution -25.64
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.99
SVM decision value 0.99
SVM RNA-class probability 0.896118
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18015051 106 - 20766785
GUGGAAAAAAAA-----GGGAAAAUGCGAAAUAAAAGGAUCAACUGCGAGGGCAAGGGUGCAAAAGGGCGGGGCGUGCAAAAUGCGGGGGGUUGGCCUGGCGUGGCCCAUA
............-----(((...((((.........(.(((...(((....)))..))).)....((((.((.(.(.(.......).).).)).)))).))))..)))... ( -25.80)
>DroSec_CAF1 28982 104 - 1
GUGGAAA--AAA-----GGGAAAAUGCGAAAUAAAAGGAUCAACUGCGAGGGCAAGGGUGCAAAAGGGCGGGGCGUGCAAAAUGCGGGGGGUUGGCCUGGCGUGGCCCAUA
.......--...-----(((...((((.........(.(((...(((....)))..))).)....((((.((.(.(.(.......).).).)).)))).))))..)))... ( -25.80)
>DroSim_CAF1 27945 104 - 1
GUGGAAA--AAA-----GGGAAAAUGCGAAAUAAAAGGAUCAACUGCGAGGGCAAGGGUGCAAAAGGGCGGGGCGUGCAAAAUGCGGGGGGUUGGCCUGGCGUGGCCCAUA
.......--...-----(((...((((.........(.(((...(((....)))..))).)....((((.((.(.(.(.......).).).)).)))).))))..)))... ( -25.80)
>DroEre_CAF1 30442 103 - 1
GUGGAAA--AAA-----GGGAAAAUGCGAAAUAAAAGGAUCAACUGCGAGGGCAAGGGUGCAA-AGGGCGGGGCGUGCAAAAUGCGGGGGGUUGGCCUGGCGUGGCCCAUA
.......--...-----(((...((((.........(.(((...(((....)))..))).)..-.((((.((.(.(.(.......).).).)).)))).))))..)))... ( -25.80)
>DroYak_CAF1 28169 109 - 1
GUGGAAA--AAAGCGAAGGGAAAAUGCGAAAUAAAAGGAUCAACUGCGAGGGCAAGGGUGCAAAAGGGCGGGGCGUGCAAAAUGCGGGGGGUUGGCCUGGCGUGGCCCAUA
.......--........(((...((((.........(.(((...(((....)))..))).)....((((.((.(.(.(.......).).).)).)))).))))..)))... ( -25.80)
>consensus
GUGGAAA__AAA_____GGGAAAAUGCGAAAUAAAAGGAUCAACUGCGAGGGCAAGGGUGCAAAAGGGCGGGGCGUGCAAAAUGCGGGGGGUUGGCCUGGCGUGGCCCAUA
.................(((...((((.........(.(((...(((....)))..))).)....((((.((.(.(.(.......).).).)).)))).))))..)))... (-25.64 = -25.64 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:38 2006