Locus 5678

Sequence ID 2R_DroMel_CAF1
Location 18,013,957 – 18,014,052
Length 95
Max. P 0.886817
window9094

overview

Window 4

Location 18,013,957 – 18,014,052
Length 95
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 93.69
Mean single sequence MFE -32.72
Consensus MFE -26.58
Energy contribution -26.58
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.94
SVM RNA-class probability 0.886817
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18013957 95 + 20766785
AAGGAGACGGAGCAAAGACACUUGACUGCGA----GUGUGGGUGAUACA----CACAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACCUCACGU
..(....)(.(((((......))).)).)((----(.((((((......----((((......)))).....(((((((....)))))))))))))))).... ( -31.30)
>DroSec_CAF1 27875 95 + 1
AAGGAGACGGAGCAAAGACACUUGACUGCGA----GUGUGGGUGAUACA----CACAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCAGCUCACGU
......(((((((....(((((((....)))----))))((((......----((((......)))).....(((((((....))))))))))).)))).))) ( -35.00)
>DroSim_CAF1 26849 95 + 1
AAGGAGACGGAGCAAAGACACUUGACUGCGA----GUGUGGGUGAUACA----CACAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACCUCACGU
..(....)(.(((((......))).)).)((----(.((((((......----((((......)))).....(((((((....)))))))))))))))).... ( -31.30)
>DroEre_CAF1 29241 95 + 1
AAGGAGACGGAGCAAAGACACUUGACUGCGA----GUGUGGGUGAUACA----CAUAUCCUCUUGUGCCGAGUCGACUCAUUCGAGUUGAGCCCACCUCACGU
..(....)(.(((((......))).)).)((----(.((((((....((----((........)))).....(((((((....)))))))))))))))).... ( -30.80)
>DroYak_CAF1 26962 103 + 1
AAGGAGACGGAGCAAAGUCACUUGACUGCGAGUGAGUGUGGGUGAUACACACACAUAGCCCCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACAUCACGU
..(....)...(((..(((....))))))..((((.(((((((........((((........)))).....(((((((....)))))))))))))))))).. ( -35.20)
>consensus
AAGGAGACGGAGCAAAGACACUUGACUGCGA____GUGUGGGUGAUACA____CACAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACCUCACGU
...(((.((.(((((......))).)).)).......((((((..........((((......)))).....(((((((....)))))))))))))))).... (-26.58 = -26.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:37 2006