Locus 5675

Sequence ID 2R_DroMel_CAF1
Location 18,009,314 – 18,009,417
Length 103
Max. P 0.829032
window9090

overview

Window 0

Location 18,009,314 – 18,009,417
Length 103
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 89.32
Mean single sequence MFE -17.48
Consensus MFE -14.40
Energy contribution -14.60
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.82
SVM decision value 0.71
SVM RNA-class probability 0.829032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18009314 103 - 20766785
GGUAGAGGCCGAGGGACUCUACUCUAGUUUUCCCUACACUGCAUACUCUGAAUACUCCGCUACAUUUCCAUACCACCC----U---ACC-AAUAUAACCCAUCCGACCCAU
(((((.((...(((((..(((...)))...))))).....((................))...............)))----)---)))-..................... ( -15.39)
>DroSec_CAF1 23433 103 - 1
GGUAGAGGCCGAGGGACUCUACUCUAGUUUUCCCUACACUGCAUACACUGCAUACUCCGCUACAUUUCCAUACCACCC----U---ACC-AAUAUAACCCAUCCGACCCAU
(((((.((...(((((..(((...)))...)))))....((((.....)))).......................)))----)---)))-..................... ( -18.80)
>DroSim_CAF1 22389 103 - 1
GGUAGAGGCCGAGGGACUCUACUCUAGUUUUCCCUACACUGCAUACACUGCAUACUCCGCUACAUUUCCAUACCACCC----U---ACC-AAUAUAACCCAUCCGACCCAU
(((((.((...(((((..(((...)))...)))))....((((.....)))).......................)))----)---)))-..................... ( -18.80)
>DroEre_CAF1 24784 101 - 1
GGUAGAGGCCGAGGGACUCUACUCUAGUUUUCCCUGCACUGCAUACACUGCAUACUCCGCUACAUUUCCAUACCACCCAACUAGCCACCCAAUAUAACCCA----------
.((((.((...(((((..(((...)))...)))))(((.((....)).))).....)).))))......................................---------- ( -16.30)
>DroYak_CAF1 22193 108 - 1
GGUAGAGGCCGAGGGAGUCUACUCUAGUUUUCCCUACACUGCAUACACUGCAUACUCCGCUACAUUUCCAUACCUACCACCCA---ACCGAAUAUAACCCAUCCGACCCAU
(((((((....((((((...((....)).))))))...))(((.....)))......................))))).....---......................... ( -18.10)
>consensus
GGUAGAGGCCGAGGGACUCUACUCUAGUUUUCCCUACACUGCAUACACUGCAUACUCCGCUACAUUUCCAUACCACCC____U___ACC_AAUAUAACCCAUCCGACCCAU
.((((.((...(((((..(((...)))...)))))....((((.....))))....)).))))................................................ (-14.40 = -14.60 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:33 2006