Locus 5670

Sequence ID 2R_DroMel_CAF1
Location 17,998,928 – 17,999,032
Length 104
Max. P 0.814358
window9083

overview

Window 3

Location 17,998,928 – 17,999,032
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -23.72
Consensus MFE -17.31
Energy contribution -16.90
Covariance contribution -0.41
Combinations/Pair 1.41
Mean z-score -1.61
Structure conservation index 0.73
SVM decision value 0.66
SVM RNA-class probability 0.814358
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17998928 104 + 20766785
AAAAUAAGUCUCACCUGGCUGAUUCGCAAUAUACGCUUCCUCAUUAACAAGGAAGUCGCAAAGGCACCUCACGACAUCAGCAUAGUACGUAUGACGACUUUUAA
.....((((((((.((((((((((((........(((((((........))))))).((....))......))).)))))).)))......))).))))).... ( -24.50)
>DroSim_CAF1 11948 104 + 1
AAAAUAAGUCUCACCUGGCUGGUUCGCAAUAUACGCUUCCUCAUUAACAAGGAAGUUGCCAAGGCGCCCCACGACAUCAGCAUAGUACGUAUGACCACGUUUAA
.......(((..((((((((((((((........(((((((........))))))).((....))......))).)))))).)))...))..)))......... ( -23.70)
>DroEre_CAF1 14315 104 + 1
AAAAUAAAUCUGAACUGGCUGGUUCGAAAUAUACGUUUCCUUAUUAACAAGGAAGUCGCUAAGGCGCCGCACGACAUCAGCAUAGUAAGUAUAAUCACGUAUUA
.............(((((((((((((..........((((((......))))))(.(((....))).)...))).)))))).)))).(((((......))))). ( -22.10)
>DroYak_CAF1 11644 104 + 1
AAAAUAAAUCUAAACUGGCUGAUUCGCAAUAUUCGUUUCCUUAUUAACAAGGAAGUCGCGAAGGCGCCUCACGACAUCAGCAUAGUACGUAUAACCACGUUUAA
.............(((((((((((((..........((((((......))))))(.(((....))).)...))).)))))).))))((((......)))).... ( -25.20)
>DroMoj_CAF1 14486 104 + 1
AAAAUCAAUCUCAAUUGGUUGGUACGCAAUAUACGCUUCCUAAUCAACAAGGAGGUAUCCAAGGCACCACACGACACCAGCAUUGUAAGUGAGAGCAUCCAUAA
........(((((....((((((..((.......(((((((........))))))).......))..(....)..))))))........))))).......... ( -21.14)
>DroPer_CAF1 8250 104 + 1
AAAAUCAACCUCAAUUGGCUGGUGCGAAACAUACGCUUUUUGGUGAACAAGGAAGUGACCAAGGCACCGCACGACACCAGCACAGUACGUACACCGUAAUAUAC
.............(((((((((((((.......((((((((.(....).))))))))......((...)).)).))))))).))))(((.....)))....... ( -25.70)
>consensus
AAAAUAAAUCUCAACUGGCUGGUUCGCAAUAUACGCUUCCUCAUUAACAAGGAAGUCGCCAAGGCACCGCACGACAUCAGCAUAGUACGUAUAACCACGUAUAA
.............(((((((((((((........(((((((........))))))).((....))......))).)))))).)))).................. (-17.31 = -16.90 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:26 2006