Locus 567

Sequence ID 2R_DroMel_CAF1
Location 2,930,350 – 2,930,454
Length 104
Max. P 0.556067
window1041

overview

Window 1

Location 2,930,350 – 2,930,454
Length 104
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 77.28
Mean single sequence MFE -40.62
Consensus MFE -19.64
Energy contribution -21.84
Covariance contribution 2.20
Combinations/Pair 1.18
Mean z-score -1.83
Structure conservation index 0.48
SVM decision value 0.04
SVM RNA-class probability 0.556067
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2930350 104 + 20766785
UCAAUAUGGCGCCCAAUGCGCAUGCCUUUUUGCUGGCAUGCGUUUCCGCUGACCAAUCAGCACGUUGCUGU-CC----UCCAGUGCG------CCGGUGUGCGUGAGGGCAUCUA
.......(((((.....(((((((((........)))))))))....((((......((((.....)))).-..----..)))))))------))(((((.(....).))))).. ( -45.10)
>DroSec_CAF1 18896 105 + 1
UCAAUAUGGCGCCCAAUGCGCAUGCCUUUUCGCUGGCAAGCGGCUCCGCUGACCAAUCAGCACGUUGUUGUUCC----UCCAGUGCG------CCGGUGUGCGUGAGGGCAUCUC
..........((((...(((((((((....((((((..((((((...(((((....))))).....))))))..----.))))))..------..)))))))))..))))..... ( -41.80)
>DroEre_CAF1 20366 104 + 1
UCAAUAUGGCGCCCAAUGCGCAUGACUUUUCGCCGGCAGGCGA-ACCGCUGACCAAUCAGCGAGCUGUUGUUGC----UCCAGUGCG------CCGGUGUGAGUGAGGGUAUCUC
(((...(.(((((....((((((.....((((((....)))))-)..(((((....)))))((((.......))----))..)))))------).))))).).)))......... ( -38.70)
>DroYak_CAF1 19351 104 + 1
UCAAUAUGGCGCCCAAUGCGCAUGCCUUUUCGCUGGGAAGCGA-ACCACUGACCAAUCAGCGAGUUGUUGUUGC----UCCAGUGCG------CCAGUAUGCGUGAGGGCAUCUC
..........((((...((((((((.....(((((((.(((((-(((.((((....)))).).))..)))))..----)))))))..------...))))))))..))))..... ( -37.50)
>DroMoj_CAF1 24367 107 + 1
UCAAUAUGGCGGCCAUUGCGCAUGACGGGUCAGAGCGAGGCG--AGCGCUGACCAAUCAGCGAUUUGUUAUUGCUAGCUCUCGUGCAUGUACAUUGGUGUAAGUGCGUG------
........(((((((.((..(((((((((....(((((((((--((((((((....)))))).)))))).)))))....))))).))))..)).)))).....)))...------ ( -40.00)
>consensus
UCAAUAUGGCGCCCAAUGCGCAUGCCUUUUCGCUGGCAAGCGA_ACCGCUGACCAAUCAGCGAGUUGUUGUUGC____UCCAGUGCG______CCGGUGUGCGUGAGGGCAUCUC
..........((((...(((((((((....((((....)))).....(((((....)))))..................................)))))))))..))))..... (-19.64 = -21.84 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:49 2006