Locus 5669

Sequence ID 2R_DroMel_CAF1
Location 17,983,471 – 17,983,571
Length 100
Max. P 0.546875
window9082

overview

Window 2

Location 17,983,471 – 17,983,571
Length 100
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 74.63
Mean single sequence MFE -27.53
Consensus MFE -13.13
Energy contribution -12.75
Covariance contribution -0.38
Combinations/Pair 1.44
Mean z-score -1.75
Structure conservation index 0.48
SVM decision value 0.03
SVM RNA-class probability 0.546875
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17983471 100 - 20766785
UUAGAUUUCUUACUAUAUGCUCUUGGUGGCCAUAGUUUGUUUCAUUC---UGCUAUU--CCUUACCACCGGAUUCGAGCACGGCCAU----AUUGUGUAUGAAGUCAAU
...((((((.....((((((.....((((((..((..((...))..)---)(((..(--((........)))....)))..))))))----...))))))))))))... ( -24.80)
>DroPse_CAF1 4573 106 - 1
AUAGGUAACCUACUACGCGAUCGUGUUGGGUAUUUUUCUGUUCUUCUUGGUGCUGUUCACCUUAUCGGCGGA--CAAACA-GUCCAUGAUUACCACGUCCCAAGUGAAC
.......(((((.((((....)))).)))))........((((..(((((.((((..........))))(((--(.....-))))..............))))).)))) ( -26.30)
>DroSec_CAF1 4873 100 - 1
UUAGAUUUCUUACUAUAUGCUCUCGGUGGCCGUAGUUUGUUUCAUUC---UGCUAUU--CCUUACCACCGGGUUCGAGCACGGCCAC----AUUGUGUAUGAAGUCAAU
...((((((.....((((((.....((((((((.(((((..((....---((.((..--...)).))...))..)))))))))))))----...))))))))))))... ( -29.60)
>DroSim_CAF1 6988 100 - 1
UUAGAUUUCUUGCUAUAUGCUCUUGGUGGCCGUAGUUUGUUUCAUUC---UGCUAUU--CCUUACCACCGGUUUCGAGCACGGCCAU----AUUGUGUACGAAGUCAAU
...((((((..((.....)).....((((((((.(((((...(....---((.((..--...)).))...)...)))))))))))))----.........))))))... ( -25.20)
>DroEre_CAF1 4684 100 - 1
UUAGAUAUCCUACUAUCUGCUCGUGGUGGCCUCAGUUGCUUUCCUCC---UGCUGUU--CUUCACCACCGGAUUCGAACGUGGCCAG----ACUGGGUAUGAAGUCAAU
...(((.((.((((.((((..((((((((...((((...........---.))))..--..)))))))((........)).)..)))----)...)))).)).)))... ( -24.80)
>DroYak_CAF1 4861 100 - 1
UUAGAUUUCUUACUAUCUGCUCCUGGUGGCUGCAGUUUGUUUCCUCC---UGCUGUG--CUGCACCACCGGAUUCGAGCAUGGCCAG----ACUCUGUAUGAAGUCAAU
...((((((.(((....((((((((((((.((((((..((.......---.))...)--))))))))))))....))))).(.....----.)...))).))))))... ( -34.50)
>consensus
UUAGAUUUCUUACUAUAUGCUCUUGGUGGCCGUAGUUUGUUUCAUCC___UGCUAUU__CCUUACCACCGGAUUCGAGCACGGCCAU____ACUGUGUAUGAAGUCAAU
...((((((.(((.....((.....))((((...(((((.....(((...((.((.......)).))..)))..)))))..))))...........))).))))))... (-13.13 = -12.75 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:25 2006