Locus 5667

Sequence ID 2R_DroMel_CAF1
Location 17,975,087 – 17,975,189
Length 102
Max. P 0.822603
window9079

overview

Window 9

Location 17,975,087 – 17,975,189
Length 102
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.61
Mean single sequence MFE -29.98
Consensus MFE -16.85
Energy contribution -17.83
Covariance contribution 0.98
Combinations/Pair 1.24
Mean z-score -2.19
Structure conservation index 0.56
SVM decision value 0.69
SVM RNA-class probability 0.822603
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17975087 102 + 20766785
GAC-GACUUUAAUUAAAGUCAAAUUUGCGAAAGUCAUGGCAAAUAGUUUUGGAAGUGUAGUUCAAG---AGGACUGGAGCCGGAGC-UCUGCUCCUCGAACUGCUCC
(((-((((((....))))))..((((((.(......).)))))).)))..(((...(((((((..(---((((..(((((....))-)))..))))))))))))))) ( -34.60)
>DroSec_CAF1 1005 102 + 1
GAC-GACUUUAAUUAAAGUCAAAUUUGCGAAAGUCAUGGGGAAUAGUUUUGGAAGUGUAGUUCAAG---AGGACUGCAGCCGGAGC-UCCGCUCCUCGAACUGCUCC
...-((((((....))))))......(((....((..((((...((((((((...((((((((...---.)))))))).)))))))-)...))))..))..)))... ( -33.00)
>DroSim_CAF1 1005 102 + 1
GAC-GACUUUAAUUAAAGUCAAAUUUGCGAAAGUCAUGGCGAAUAGUUUUGGAAGUGUAGUUCAAG---AGGACUGGAGCCGGAGC-UCUGCUCCUCGAACUGGUCC
(((-((((((....))))))..((((((.(......).)))))).............((((((..(---((((..(((((....))-)))..)))))))))))))). ( -32.00)
>DroEre_CAF1 953 102 + 1
GAC-GACUUUAAUUAAAGUCAAAUUUGCGAAAGUCAUGGCGAAUAGUUUUGGAAGUGUAGUUCAAG---GGGACUGGAGCCGGAGC-CUUGCUCCUCGAACUGCUCC
(((-((((((....))))))..((((((.(......).)))))).)))..(((...(((((((.((---....))(((((.((...-)).)))))..)))))))))) ( -30.90)
>DroYak_CAF1 1006 103 + 1
GAC-GACUUUAAUUAAAGUCAAAUUUGCGAAAGUCAUGGCGAAUAGUUUUGGAAGUGUAGUUCAAG---AGUACUGUAGCCGGAGCUCUUGCUCCUCGAACUGCUCC
(((-((((((....))))))..((((((.(......).)))))).)))..(((...(((((((..(---.((......)))(((((....)))))..)))))))))) ( -28.90)
>DroAna_CAF1 932 85 + 1
AGCUUUCUUCAUUUGUUGAAAAAUUAGUGGAAAUUAUAGAGAAUAGUUUCCGAAGUGUAGAAGAAGGAAAGGACUAUAGAGGA--C-U-------------------
..(((((((((((.(((....))).)))(((((((((.....)))))))))........))))))))..((..((....))..--)-)------------------- ( -20.50)
>consensus
GAC_GACUUUAAUUAAAGUCAAAUUUGCGAAAGUCAUGGCGAAUAGUUUUGGAAGUGUAGUUCAAG___AGGACUGGAGCCGGAGC_UCUGCUCCUCGAACUGCUCC
....((((((....))))))......((....))...(((...(((((((.....((.....)).....)))))))..)))(((((....)))))............ (-16.85 = -17.83 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:22 2006