Locus 5666

Sequence ID 2R_DroMel_CAF1
Location 17,974,644 – 17,974,749
Length 105
Max. P 0.854491
window9078

overview

Window 8

Location 17,974,644 – 17,974,749
Length 105
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 90.97
Mean single sequence MFE -30.54
Consensus MFE -22.68
Energy contribution -23.92
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -2.26
Structure conservation index 0.74
SVM decision value 0.80
SVM RNA-class probability 0.854491
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17974644 105 + 20766785
UAAAGUUGGCCCGAACAAGGGUCUUAAAGUUAUGGCCGCAUGGAGUGCACUUGGACAAAAAGUGUACUUCAAUUUGGAAAGGCAU-----UUGGAACAUU-UAAAGGCAGU
.......(((((......)))))...........(((...((((((((((((.......)))))))))))).((..((......)-----)..)).....-....)))... ( -31.40)
>DroSec_CAF1 567 104 + 1
UAAAGUUGGCCCGAACAAGGGUCAUA-AGUUAUGGCCGCGUGGAGUGCACUUGGACAAAAAGUGUACUUCAAUGUGGAAAGGCAU-----UUGGAACAUU-UAAAGGCAGU
......((((((......))))))..-........(((((((((((((((((.......))))))))))).))))))....((.(-----(((((...))-)))).))... ( -35.20)
>DroSim_CAF1 564 105 + 1
UAAAGUUGGCCCGAACAAGGGUCUUAAAGUUAUGGCCGCGUGGAGUGCACUUGGACAAAAAGUGUACUUCAAUGUCGAAAGGCUU-----UUGGAACAUU-UAAAGGCAGU
.......(((((......)))))...........(((...((((((((((((.......))))))))))))..(((....)))..-----..........-....)))... ( -35.10)
>DroEre_CAF1 559 110 + 1
UAAAGUUGGCCCGAACAAGGGACUUAAAGUUAUGGCCGCGUCGAGUGCACUUGGGCAAAAAGGGUACUUCAAUUUGGAAAGGCAUUUAAUUUGGAACAUU-UAAAUGCAGU
..(((((((((((..((...(((.....))).))..)((.(((((....))))))).....))))....))))))......((((((((..........)-)))))))... ( -23.40)
>DroYak_CAF1 569 106 + 1
UAAAGUUGGCCCGAACAAGGGACUUAAAGUUAUGACCGCGUCGAGUGCACUUGGCCAAAAUGUGUACUUCAAUUUGGAAAGGCAU-----UUGGAGCAUUUUAAAGACAAU
....((((((((......))).)).............((..(((((((.(((..(((((.((.......)).))))).)))))))-----)))..))........)))... ( -27.60)
>consensus
UAAAGUUGGCCCGAACAAGGGUCUUAAAGUUAUGGCCGCGUGGAGUGCACUUGGACAAAAAGUGUACUUCAAUUUGGAAAGGCAU_____UUGGAACAUU_UAAAGGCAGU
....((((((((......))))).....(((....(((..((((((((((((.......))))))))))))...)))...)))...........))).............. (-22.68 = -23.92 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:21 2006