Locus 5664

Sequence ID 2R_DroMel_CAF1
Location 17,970,122 – 17,970,214
Length 92
Max. P 0.896871
window9075

overview

Window 5

Location 17,970,122 – 17,970,214
Length 92
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -27.83
Consensus MFE -25.19
Energy contribution -25.07
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.91
SVM decision value 0.99
SVM RNA-class probability 0.896871
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17970122 92 + 20766785
GCUUUUCCGGACGAGCAAAUGACCCGGAAAGGCCGAACG--AAGGCGGCUCGGAAAA--GGAAAAUGUGGAAAAUAUGGCAGCGCACGGGCGGCAA
((((((((((.............))))))))))......--...((.(((((.....--.(...((((.....))))..)......))))).)).. ( -28.72)
>DroSec_CAF1 27319 92 + 1
GCUUUCCCGGACGAGCAAAUGACCCGGAAAGGCCGAACG--AAGGCGGCUCGUAAAA--GGAAAAUGUGGAAAAUAUGGCAGCGCACGGGCGGCAA
.((((((.((.((......)).)).))))))((((..((--...(((((.((((...--...............))))))..))).))..)))).. ( -25.67)
>DroSim_CAF1 22913 92 + 1
GCUUUUCCGGACGAGCAAAUGACCCGGAAAGGCCGAACG--AAGGCGGCUCGUAAAA--GGAAAAUGUGGAAAAUAUGGCAGCGCACGGGCGGCAA
((((((((((.............))))))))))......--...((.((((((....--.(...((((.....))))..).....)))))).)).. ( -29.32)
>DroEre_CAF1 31707 92 + 1
GCUUUUCCGGACGAGCAAAUGACCCGGAAAGGCCGAACG--AAGGCGGCUCGUAAAA--GGAAAAUGCGGAAAAUAUGGCAGCGCACGGGCGGCAA
((((((((((.............))))))))))......--...((.((((((....--.(....(((.(......).)))...))))))).)).. ( -28.12)
>DroYak_CAF1 31709 96 + 1
GCUUUUCCGGACGAGCAAAUGACCCGGAAAGGCCGCACGGAAAGGCGGCUCGCAAAAGAGGAAAAUGUGGAAAAUAUGGCAGCGCAUGGGCGGCAA
..((((((((.............))))))))(((((.((.....(((.(((......)))(...((((.....))))..)..))).)).))))).. ( -27.32)
>consensus
GCUUUUCCGGACGAGCAAAUGACCCGGAAAGGCCGAACG__AAGGCGGCUCGUAAAA__GGAAAAUGUGGAAAAUAUGGCAGCGCACGGGCGGCAA
((((((((((.............))))))))))...........((.(((((.............((((.............))))))))).)).. (-25.19 = -25.07 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:18 2006