| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,969,401 – 17,969,493 |
| Length | 92 |
| Max. P | 0.812034 |
| Location | 17,969,401 – 17,969,493 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 93.32 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -21.38 |
| Energy contribution | -21.78 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17969401 92 - 20766785 UGUACAGAUAUAUGCGCCAUAAAAUCAGACAGUUUCGCUCCGUGUGGCCUUGGGCAAAGGUCAUGUG--GGAGUCAAGUGUAUGAAUGUUUAUG .(..((......))..)((((((.(((.(((.((..((((((..(((((((.....)))))))..).--))))).)).))).)))...)))))) ( -27.30) >DroSec_CAF1 26566 91 - 1 UGUACAGAUAUAUGCGC-AUAAAAUCAGACAGUUUCGCUCCGUGUGGCCUUGGGCAAAGGUCAUGUG--GGAGUCAAGUGUAUGAAUGUUUAUG ................(-(((((.(((.(((.((..((((((..(((((((.....)))))))..).--))))).)).))).)))...)))))) ( -26.70) >DroSim_CAF1 22170 92 - 1 UGUACAGAUAUAUGCGCCAUAAAAUCAGACAGUUUCGCUCCGUGUGGCCUUGGGCAAAGGUCAUGUG--GGAGUCAAGUGUAUGAAUGUUUAUG .(..((......))..)((((((.(((.(((.((..((((((..(((((((.....)))))))..).--))))).)).))).)))...)))))) ( -27.30) >DroEre_CAF1 31036 92 - 1 UUUAUAGAUAAAUGCGCCAUCAAAUCAGGCAGUUUUGCUCCGUGUGGCCCUGGGCAAAGGUCAUGUG--GGAGUCAAGUGUAUGAAUGUUUAUG ..((((((((.(((((((.........)))...(((((((((..(((((.(.....).)))))..).--)))).)))).))))...)))))))) ( -25.00) >DroYak_CAF1 30947 94 - 1 UUUAUAGAUAAAUGCGCCAUAAAAUCGGGCAGUUUUGCUGCGUGUGGCCUUGGGCAAAGGUCAUAUGGGGGAGUCAAGUGUAUGAAUGUUUAUG ..((((((((.(((((((.........)))....((.((.(((((((((((.....))))))))))).)).))......))))...)))))))) ( -28.20) >consensus UGUACAGAUAUAUGCGCCAUAAAAUCAGACAGUUUCGCUCCGUGUGGCCUUGGGCAAAGGUCAUGUG__GGAGUCAAGUGUAUGAAUGUUUAUG .................((((((.(((.(((.((..((((((..(((((((.....)))))))..)...))))).)).))).)))...)))))) (-21.38 = -21.78 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006