| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,969,271 – 17,969,364 |
| Length | 93 |
| Max. P | 0.580940 |
| Location | 17,969,271 – 17,969,364 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.31 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -21.67 |
| Energy contribution | -21.75 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17969271 93 - 20766785 ----AGACCGG--------------------UUUGACCGUUGGCCAUUUCAAUAUGGCCCAAAGGACCUGCCAGUUUAAUCAACAUUUCGUCAGUGUUAAUGUCCUUGGCAAU--UUCU ----....(((--------------------.....)))..((((((......))))))...((((..((((((....((.((((((.....)))))).))....))))))..--)))) ( -24.70) >DroSec_CAF1 26436 93 - 1 ----AGCCCUG--------------------UUUGACCGUUGGCCAUUUCAAUAUGGCCCGAAGGACCUGCCAGUUUAAUCAACAUUUCGUCAGUGUUAAUGUCCUUGGCAAU--UUCU ----.(((...--------------------......((..((((((......))))))))((((((......(......)((((((.....))))))...)))))))))...--.... ( -22.30) >DroSim_CAF1 22040 93 - 1 ----AGCCCUG--------------------UUUGACCGUUGGCCAUUUCAAUAUGGCCCGAAGGACCUGCCAGUUUAAUCAACAUUUCGUCAGUGUUAAUGUCCUUGGCAAU--UUCU ----.(((...--------------------......((..((((((......))))))))((((((......(......)((((((.....))))))...)))))))))...--.... ( -22.30) >DroEre_CAF1 30906 93 - 1 ----AGCCUUG--------------------UUUGACCGUUGGCCAUUUCAAUAUGGCCCAAAGGACCUGCCAGUUUAAUCAACAUUUCGUCAGUGUUAAUGUCCUCGGCCAU--UUCU ----.(((...--------------------..........((((((......))))))...(((((......(......)((((((.....))))))...))))).)))...--.... ( -20.30) >DroYak_CAF1 30815 95 - 1 ----AGCCCUC--------------------UUUGACCGUUGGCCAUUUCAAUAUGGCCCAAAGGAGCUGCCAGUUUAAUCAACAUUUCGUCAGUGUUAAUGUCCCUGGCAAUCGUCCU ----(((.(.(--------------------((((......((((((......)))))))))))).)))(((((....((.((((((.....)))))).))....)))))......... ( -26.90) >DroAna_CAF1 5227 117 - 1 GUCCUGCCCAGGAUCCUACUCCCCACUGACAGCUGACCGUUGGCCAUUUCAAUAUGGCCCAAAGGGGCUGCCAGUUUAAUCAACAUUUUGUCAGUGUUAAUGUCUUUGGCGAU--UUCU ....((((.(((((..........((((.(((((..((...((((((......))))))....))))))).))))......((((((.....))))))...))))).))))..--.... ( -33.90) >consensus ____AGCCCUG____________________UUUGACCGUUGGCCAUUUCAAUAUGGCCCAAAGGACCUGCCAGUUUAAUCAACAUUUCGUCAGUGUUAAUGUCCUUGGCAAU__UUCU ....................................((...((((((......))))))....))...((((((....((.((((((.....)))))).))....))))))........ (-21.67 = -21.75 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:16 2006