Locus 5661

Sequence ID 2R_DroMel_CAF1
Location 17,969,015 – 17,969,124
Length 109
Max. P 0.518558
window9072

overview

Window 2

Location 17,969,015 – 17,969,124
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 94.80
Mean single sequence MFE -21.65
Consensus MFE -19.36
Energy contribution -19.18
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.89
SVM decision value -0.03
SVM RNA-class probability 0.518558
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17969015 109 - 20766785
UACCACGGAAUGCGUCUCGUUAGCCGAAACAAAAGUAAAAAUAAUCAUAAAAAGGAAACAAGAGUCGGCGGCAGGACGGAAAGAAAGCAAAAAGUUAACUUCUGGCCAG
.............(((..(((.(((((.((....)).................(....).....))))))))..)))((..(((((((.....)))...))))..)).. ( -21.80)
>DroSec_CAF1 26185 109 - 1
UACCACGGAAUGCGUCUCGUUAGCCGAAACAAAAGUAAAAAUAAUCAUAAAAAGGAAACAAGAGUCGGCGGCAGGACGGAAAGAAAGCAAAAAGUUAACUUCUGGCCAG
.............(((..(((.(((((.((....)).................(....).....))))))))..)))((..(((((((.....)))...))))..)).. ( -21.80)
>DroSim_CAF1 21789 109 - 1
UACCACGGGAUGCGUCUCGUUAGCCGAAACAAAAGUAAAAAUAAUCAUAAAAAGGAAACAAGAGUCGGCGGCAGGACGGAAAGAAAGCAAAAAGUUAACUUCUGCCCAG
......(((.(.((((..(((.(((((.((....)).................(....).....))))))))..)))).).(((((((.....)))...)))).))).. ( -24.00)
>DroYak_CAF1 30567 102 - 1
UACCACGGAAUGCGUCUCGUUAGCCGAAACAAAAGUAAAAAUAAUCAUAAAAAGGAAACAAGAGUCGGCGGCAGGACGAAAAA-------AAAGUUAACUUCUGCCCAG
......((....((((..(((.(((((.((....)).................(....).....))))))))..)))).....-------.(((....)))....)).. ( -19.00)
>consensus
UACCACGGAAUGCGUCUCGUUAGCCGAAACAAAAGUAAAAAUAAUCAUAAAAAGGAAACAAGAGUCGGCGGCAGGACGGAAAGAAAGCAAAAAGUUAACUUCUGCCCAG
.....(((((..((((..(((.(((((.((....)).................(....).....))))))))..))))...............(....))))))..... (-19.36 = -19.18 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:15 2006