Locus 5660

Sequence ID 2R_DroMel_CAF1
Location 17,964,757 – 17,964,849
Length 92
Max. P 0.749586
window9071

overview

Window 1

Location 17,964,757 – 17,964,849
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 81.30
Mean single sequence MFE -19.88
Consensus MFE -10.42
Energy contribution -13.53
Covariance contribution 3.11
Combinations/Pair 1.09
Mean z-score -2.61
Structure conservation index 0.52
SVM decision value 0.47
SVM RNA-class probability 0.749586
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17964757 92 + 20766785
UAUUUCAUUCUUGGAUUCUCAUAUUGACCAACUGGUCAAAUAAAUGCGAAGCAAGCAAAUAAAGGAAGCGGGGCUUUGAAAGAAAGAUGAAA
..((((((.(((...........((((((....)))))).......((((((..((...........))...)))))).....))))))))) ( -21.00)
>DroPse_CAF1 6868 86 + 1
UAUUUCAAUUUCGUAUUUUCAUAUUGACCAACUGGUCAAAUAAAUUCACAGCAAAUAAACAGACCAUGAGGAGC-----AAAAAGCAUACA-
............((((((((((.((((((....))))))...........(........).....)))))))((-----.....)).))).- ( -12.10)
>DroSim_CAF1 17689 92 + 1
UAUUUCAUUUUUGGAUUCUCAUAUUGACCAACUGGUCAAAUAAAUGCGAAGCAAGCAAAUAAAGGAAGCUGGGCUUUGAAAGAAAGAUGAAA
..((((((((((...........((((((....)))))).......((((((.(((...........)))..))))))....)))))))))) ( -24.20)
>DroEre_CAF1 26665 92 + 1
UAUUUCAUUUUUGGAUUCCCAUAUUGACCAACUGGUCAAAUAAAUGCGAAGCAAGCAAAUAAACCAAGCAGGGCUUUGGAAGAAAGAUGAAA
..((((((((((...((((....((((((....))))))........(((((..((...........))...))))))))).)))))))))) ( -23.70)
>DroYak_CAF1 26098 92 + 1
UAUUUCAUUUUUGGACUCUCAUAUUGACCGAGUGGUCAAAUAAAUGCGAAGCAAGCAAAUAAACCAAGCAGGGCUUUGCAAGAAAGAUGAAA
..((((((((((...........((((((....)))))).....((((((((..((...........))...))))))))..)))))))))) ( -26.20)
>DroPer_CAF1 6899 86 + 1
UAUUUCAAUUUCGUAUUUUCAUAUUGACCAACUGGUCAAAUAAAUUCACAGCAAAUAAACAGACCAUGAGGAGC-----AAAAAGCAUACA-
............((((((((((.((((((....))))))...........(........).....)))))))((-----.....)).))).- ( -12.10)
>consensus
UAUUUCAUUUUUGGAUUCUCAUAUUGACCAACUGGUCAAAUAAAUGCGAAGCAAGCAAAUAAACCAAGCGGGGCUUUG_AAGAAAGAUGAAA
...(((((((((...........((((((....)))))).......((((((..((...........))...))))))....))))))))). (-10.42 = -13.53 +   3.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:14 2006