Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,928,731 – 2,928,827 |
Length | 96 |
Max. P | 0.500000 |
Location | 2,928,731 – 2,928,827 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -30.23 |
Consensus MFE | -26.05 |
Energy contribution | -25.55 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.39 |
Structure conservation index | 0.86 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2928731 96 - 20766785 GGAGCCGGGCUGGGUUAUGGGGCAACACUGCCGCUUAUUAGAAAUGGUAAACAAACAGUCAGAUCGUGUUGAACUUUAUGGUCCUCCAUGCCGGAU ((((...(((((.(((..(.((((....)))).).(((((....))))))))...))))).(((((((........)))))))))))......... ( -28.40) >DroSec_CAF1 17416 96 - 1 AGAGCCGGGCUGGGUUAUGGUUCACCAUUGCUGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCGUGUUGAACUUUAUGGUCCUCCAUACCGGAU ....(((((((((((.((((....)))).)))(.((((((....)))))).)...))))).(((((((........)))))))........))).. ( -28.90) >DroSim_CAF1 21400 96 - 1 GGAGCCGGGCUGGGUUAUGGUUCACCACUGCCGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCGUGUUGAACUUUAUGGUCCUCCAUGCCGGAU ((((...((((((((..(((....)))..)))(.((((((....)))))).)...))))).(((((((........)))))))))))......... ( -32.00) >DroEre_CAF1 18890 95 - 1 GGAGCCGGGCUGGGUUAUGCGGCACCGCAGCCGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCA-GUUGAACUUUAUGGUCCUCCAUGCCGGAU ((((...(((((.(((..(((((......))))).(((((....))))))))...))))).(((((-...........)))))))))......... ( -31.60) >consensus GGAGCCGGGCUGGGUUAUGGGGCACCACUGCCGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCGUGUUGAACUUUAUGGUCCUCCAUGCCGGAU ....(((((((((((..((......))..)))(.((((((....)))))).)...))))).(((((((........)))))))........))).. (-26.05 = -25.55 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:48 2006