Locus 5658

Sequence ID 2R_DroMel_CAF1
Location 17,960,146 – 17,960,255
Length 109
Max. P 0.875699
window9068

overview

Window 8

Location 17,960,146 – 17,960,255
Length 109
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 98.18
Mean single sequence MFE -34.28
Consensus MFE -32.36
Energy contribution -32.56
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.94
SVM decision value 0.89
SVM RNA-class probability 0.875699
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17960146 109 - 20766785
UCAGUUCGGUUCACUUUAGUCCGUGUUUCGGCUUAGAAGUUUCCGCUUUUGGGGCCGACGGAGCAACUAAAUGCCAGCCGUAAACUUUGGCUUUAGUGCACU--GCAUUCC
..(((.((((.((((..((((...((((((((((((((((....)))))).))))))((((.(((......)))...))))))))...))))..)))).)))--).))).. ( -34.00)
>DroSec_CAF1 17392 109 - 1
UCAGUUCGGUUCACUUUAGUCCGUGUUUCGGCUUAGAAGUUUCCGCUUUUGGGGCCGACGGAGCAACUAAAUGCCAGCCGUAAACUUUGGCUUUAGUGCACU--GCAUUCC
..(((.((((.((((..((((...((((((((((((((((....)))))).))))))((((.(((......)))...))))))))...))))..)))).)))--).))).. ( -34.00)
>DroSim_CAF1 13081 109 - 1
UCAGUUCGGUUCACUUUAGUCCGUGUUUCGGCUUAGAAGUUUCCGCUUUUGGGGCCGACGGAGCAACUAAAUGCCAGCCGUAAACUUUGGCUUUAGUGCACU--GCAUUCC
..(((.((((.((((..((((...((((((((((((((((....)))))).))))))((((.(((......)))...))))))))...))))..)))).)))--).))).. ( -34.00)
>DroEre_CAF1 21980 109 - 1
UCAGUUCGGUUCACUUUAGUCCGUGUUUCGGCUUAGAAGUUUCCGCUUUUGGGGCCGACGGAGCAACUAAACGCCAGCCGUAAACUUUGGCUUUAGUGCACU--GCACUCC
..(((.((((.((((..((((...((((((((((((((((....)))))).))))))((((.((........))...))))))))...))))..)))).)))--).))).. ( -35.20)
>DroYak_CAF1 21125 111 - 1
UCAGUUUGGUUCACUUUAGUCCGUGUUUCGGCUUAGAAGUUUCCGCUUUUGGGGCCGACGGAGCAACUAAAUGCCAGCCGUAAACUUUGGCUUUAGUGCACUGUGCAUUCC
...((.((((.((((..((((...((((((((((((((((....)))))).))))))((((.(((......)))...))))))))...))))..)))).)))).))..... ( -34.20)
>consensus
UCAGUUCGGUUCACUUUAGUCCGUGUUUCGGCUUAGAAGUUUCCGCUUUUGGGGCCGACGGAGCAACUAAAUGCCAGCCGUAAACUUUGGCUUUAGUGCACU__GCAUUCC
...((..(((.((((..((((...((((((((((((((((....)))))).))))))((((.(((......)))...))))))))...))))..)))).)))..))..... (-32.36 = -32.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:11 2006