Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,958,789 – 17,958,883 |
Length | 94 |
Max. P | 0.677076 |
Location | 17,958,789 – 17,958,883 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 73.71 |
Mean single sequence MFE | -32.49 |
Consensus MFE | -7.93 |
Energy contribution | -9.09 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.26 |
Mean z-score | -1.70 |
Structure conservation index | 0.24 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17958789 94 + 20766785 CUGGCAUUU-CCCAACUCCC-AGCCCUCGGAAUCUCGACCCAACCCUUUUU--UUUUUUGGUCUGCGAGGGUG--GGGCUG-----------GGGACUUUUCAUAAUUAAU .......((-((((.(.(((-(.(((((((.....)((((...........--......))))..))))))))--))).))-----------))))............... ( -28.93) >DroSec_CAF1 16074 89 + 1 CUGGCAUUU-CCCAACUCCC-AGCCCUCGGAAUCUCAAGCCAACCCUUU------UUUUGGUCUGCGG-GGUG--GUGCUG-----------GGGACUUUUCAUAAUUAAU .......((-((((.(..((-(.(((.(((........(((((......------..)))))))).))-).))--).).))-----------))))............... ( -23.60) >DroSim_CAF1 11749 90 + 1 CUGGCAUUU-CCCCACUCCC-AGCCCUCGGAAUCUCAAGCCAACCCUUU------UUUUGGUCUGCGGGGGUG--GUGCUG-----------GGGACUUUUCAUAAUUAAU .(((.(..(-((((((.((.-.(((((((......((..((((......------..))))..))))))))))--).).))-----------))))..).)))........ ( -28.70) >DroEre_CAF1 20607 99 + 1 CUGGCGUUUCCCCCACUUC--AGCGCUCGGAAUCUCAGCCCAGUCCUUUUGGGGC--------UGCGGGGGUG--CGGCUGGGGCUGGGCUUGGGACUUUUCAUAAUUAAU ((((((((...........--))))).)))..(((((((((((((((.....(((--------((((....))--))))))))))))))).)))))............... ( -40.30) >DroYak_CAF1 19697 106 + 1 CUUG-----CCCCAACUCCCUUGCCCUCGGAAUCUCAGCCCUGUCCUUAUGGGGCUUUGGGUCUGCGGUGGUGUGGGGGUGGGACUCGGGCUGGGACUUUUCAUAAUUAAU ((.(-----(((....((((..(((((((..(((.((((((.((((.....))))...))).))).)))....)))))))))))...)))).))................. ( -40.90) >consensus CUGGCAUUU_CCCAACUCCC_AGCCCUCGGAAUCUCAACCCAACCCUUUU_____UUUUGGUCUGCGGGGGUG__GGGCUG___________GGGACUUUUCAUAAUUAAU ..........(((....(((..(((((((......((..((((..............))))..)))))))))...)))..............)))................ ( -7.93 = -9.09 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:10 2006