Locus 5656

Sequence ID 2R_DroMel_CAF1
Location 17,957,995 – 17,958,103
Length 108
Max. P 0.500000
window9066

overview

Window 6

Location 17,957,995 – 17,958,103
Length 108
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 72.17
Mean single sequence MFE -30.12
Consensus MFE -13.70
Energy contribution -17.70
Covariance contribution 4.00
Combinations/Pair 1.26
Mean z-score -1.99
Structure conservation index 0.45
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17957995 108 + 20766785
AUCAAUGGGCCAGUACGACAAGUGCACUGCGAGAAAUCGUACAGGAUUUCGAUCACAUAUCGGUUCUAAUCACUUUCUGUUUUUCAGUAGAGAGUAUUGCACCUUUUA---------
......((..((((((((.(((((...(((((....)))))..(((..(((((.....))))).)))...)))))))....((((....))))))))))..)).....--------- ( -24.10)
>DroSec_CAF1 15257 113 + 1
AUCAAUGGGCCAGUACGACAAGUGCACUGCGAGAAAUCAUACAGGACUUCGAUCACAUAUCGGUUCUUAUCACUUUCUGAUUUUCAGUAGAGAGUAUUGCACCCUUGGUUGCA----
(((((.(((.((((((((.(((.((.(((.((....))...))).....((((.....)))))).))).)).(((((((.....))).)))).))))))..))))))))....---- ( -27.10)
>DroSim_CAF1 10990 83 + 1
AUCAAUGGGCCAGUACGACAAGUGCACUGCGAGAAAUCGUACAGGAUUUGGAUCACAUAUCGGUUCAUAUCACUUCCUGAUUU----------------------------------
....(((((((.((((.....))))..(((((....)))))...(((.((.....)).))))))))))...............---------------------------------- ( -21.20)
>DroEre_CAF1 19771 104 + 1
AUCAAUGGGCCAGUACGACAAGUGCACUGCGAGAAAUCG--CAGGGUCUGGCUCACAGAUCGGCAUUUGUCGCUGUUUGAUUUUCAGCGA--AGUAUUGCC---------GCUUUUG
.......(((.((((((((((((((.((((((....)))--)))((((((.....)))))).)))))))))((((.........))))..--.))))))))---------....... ( -48.10)
>consensus
AUCAAUGGGCCAGUACGACAAGUGCACUGCGAGAAAUCGUACAGGAUUUCGAUCACAUAUCGGUUCUUAUCACUUUCUGAUUUUCAGUAG__AGUAUUGCA________________
......(((((.((((.....)))).((((((....)))..))).................))))).....((((((((........))))))))...................... (-13.70 = -17.70 +   4.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:09 2006