Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,957,446 – 17,957,551 |
Length | 105 |
Max. P | 0.997283 |
Location | 17,957,446 – 17,957,551 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 95.23 |
Mean single sequence MFE | -37.18 |
Consensus MFE | -31.58 |
Energy contribution | -32.74 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.59 |
Structure conservation index | 0.85 |
SVM decision value | 2.83 |
SVM RNA-class probability | 0.997283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17957446 105 - 20766785 UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCUGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUCGGGCCGGCUUUCU .....((((((((...((((((..((((....((.(((..(((((.....)))))(((((....))))))))))..))))..))...))))..)))))))).... ( -39.80) >DroSec_CAF1 14728 105 - 1 UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCAGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUCCGGCCGGCUUUCU .....((((((((...(((((((((...)).)))......(((((.....)))))))))....((((((..(....).((....)).)))))))))))))).... ( -39.20) >DroSim_CAF1 10461 105 - 1 UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCAGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUCCGGCCGGCUUUCU .....((((((((...(((((((((...)).)))......(((((.....)))))))))....((((((..(....).((....)).)))))))))))))).... ( -39.20) >DroEre_CAF1 19270 103 - 1 UUCCCAGCUGGCCAUAAGCAGAUCCCACGGCAUCAGAAGCGGCACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUGGCUC-GC-CGGCUUUCU .....(((((((....(((.((..(((((((((.(((((.....))))).)))))(((((....))))).......))))..))....))).-))-))))).... ( -37.00) >DroYak_CAF1 18258 104 - 1 UUCCCAGCUGGCCAUAAGCAGAUCCCACGGCAUCAGAAGCGCCACUUUUACUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUACUC-GCCCGGCUUUCU .....(((((((..((((..((..((((((((..(((((.....)))))..))))(((((....))))).......))))..)).))))...-).)))))).... ( -30.70) >consensus UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCAGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUC_GGCCGGCUUUCU .....((((((((...((((((..((((....((.(((..(((((.....)))))(((((....))))))))))..))))..))...))))..)))))))).... (-31.58 = -32.74 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:08 2006