| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,951,446 – 17,951,551 |
| Length | 105 |
| Max. P | 0.820758 |
| Location | 17,951,446 – 17,951,551 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 89.10 |
| Mean single sequence MFE | -44.75 |
| Consensus MFE | -34.20 |
| Energy contribution | -35.45 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17951446 105 - 20766785 UAUUUGCCUGCCCGGCUGGAUGCUGGAUUCUUUAUUCUGGAUGCUGGAUGUUGGAUUGCGGAUGCUCCGCCCAGCCGGGAAAGUCACCCCGG-GGAAACCCGCGGG ....((.((.(((((((((......(((((..(((((........)))))..)))))((((.....)))))))))))))..)).))((((((-(....)))).))) ( -50.30) >DroSec_CAF1 8699 98 - 1 UAUUUGCCUGCCCGGCUGGAUGCUGGAUUCUUCAUUCU-------GUAUGCUGGAUUCCGGAUGCUCCGCCAAGCCGGGAAAGUCACCCCGG-GGAAACCUGUGGG ....((.((.((((((((((..(((((.(((.(((...-------..)))..))).)))))....)))....)))))))..)).))((((((-(....)))).))) ( -40.30) >DroSim_CAF1 4464 105 - 1 UAUUUGCCUGCCCGGCUGGAUUCUGGAUUCUUUAUUCUGGCUGCUGGAUGCUGGAUUCCGGAUGCUCCGCCCAGCCGGGAAAGUCACCCCGG-GGAAACCUGCGGG ....((.((.(((((((((..((((((.(((....((..(...)..))....))).)))))).((...)))))))))))..)).))((((((-(....)))).))) ( -47.00) >DroEre_CAF1 13541 106 - 1 UAUUUGCCUGCCCUGCUGGAUGCUGGAUGCUGGAUUCUGGAUACUGGAUGCUGGAUUCCGGAUGCUCCGCCCACCCGGGAAGGUCACCCCGGGGGAAACCUGCGGG ...........(((((.((..((.(((..(((((.((..(..........)..)).)))))....)))))((.((((((........))))))))...)).))))) ( -41.40) >consensus UAUUUGCCUGCCCGGCUGGAUGCUGGAUUCUUUAUUCUGGAUGCUGGAUGCUGGAUUCCGGAUGCUCCGCCCAGCCGGGAAAGUCACCCCGG_GGAAACCUGCGGG ....((.((.(((((((((.....((((((..(((((........)))))..))))))(((.....))).)))))))))..)).))((((((.(....)))).))) (-34.20 = -35.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:57 2006