| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,948,414 – 17,948,522 |
| Length | 108 |
| Max. P | 0.640843 |
| Location | 17,948,414 – 17,948,522 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.39 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -21.36 |
| Energy contribution | -23.32 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17948414 108 - 20766785 ------------AAAAAAGCGGCGGGAAAAAAUGGCUUGCAAGGAGGCAAGGGCUUCACCUUGUUAGCGGCUUGUUUGCUUUUCAAUUUCGACUGCUGAAGCCGAAAACGGCAAUAAAUC ------------.....(((((((..(......(((..(((((..(((((((......))))))...)..)))))..)))......)..)).)))))...((((....))))........ ( -35.10) >DroVir_CAF1 6877 98 - 1 -------------A-ACAA---C-AGAAAAAAUGAC--GCAAGCUGGCUAA-GCUUCACCUUGUUAGCGGCUUGUUUGCUUUUCAAUUUUCGGU-CUGAAGCCGAAAACGGCAAUAAAUC -------------.-....---(-(((.(((((((.--((((((.((((..-(((..........))))))).))))))...)).)))))...)-)))..((((....))))........ ( -25.30) >DroSec_CAF1 5744 106 - 1 ------------AA-AAAGCGGCGGGAA-AAAUGGCUUGCAAGGAGGCAAGGGCUUCACCUUGUUAGCGGCUUGUUUGCUUUUCAAUUUCGACUGCUGAAGCCGAAAACGGCAAUAAAUC ------------..-..(((((((..(.-....(((..(((((..(((((((......))))))...)..)))))..)))......)..)).)))))...((((....))))........ ( -34.70) >DroSim_CAF1 1473 106 - 1 ------------AA--AAGCGGCGGGAAAAAAUGGCUUGCAAGGAGGCAAGGGCUUCACCUUGUUAGCGGCUUGUUUGCUUUUCAAUUUCGACUGCUGAAGCCGAAAACGGCAAUAAAUC ------------..--.(((((((..(......(((..(((((..(((((((......))))))...)..)))))..)))......)..)).)))))...((((....))))........ ( -35.10) >DroYak_CAF1 10513 119 - 1 AAAAACAAAAAAAA-CAGGCGGCGGGAAAAAAUGGCUUGCAAGGAGGCAAGGACUUCACCUUGUUAGCGGCUUGUUUGCUUCUCAAUUUCGACUGCUGAAGCCGAAAACGGCAAUAAAUC ..............-..(((((((..(......(((..(((((..(((((((......))))))...)..)))))..)))......)..)).)))))...((((....))))........ ( -33.80) >DroMoj_CAF1 52 98 - 1 ------------CA-AAAA-----CGAAAAAGUGAC--GCAAGCUGGCUAA-GCCUCACCUUGUUAGCGGCUUGUUUGCUUUUCAAUUUUCGGU-CUGAAGCCGAAAACGGCAAUAAAUC ------------..-....-----((.(((((..(.--((((((((.((((-...........)))))))))))))..)))))...((((((((-.....)))))))))).......... ( -26.80) >consensus ____________AA_AAAGCGGCGGGAAAAAAUGGCUUGCAAGGAGGCAAGGGCUUCACCUUGUUAGCGGCUUGUUUGCUUUUCAAUUUCGACUGCUGAAGCCGAAAACGGCAAUAAAUC ...................((((((...(((.(((...(((((.((((...(((........)))....)))).)))))...))).)))...))))))..((((....))))........ (-21.36 = -23.32 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:56 2006