Locus 5645

Sequence ID 2R_DroMel_CAF1
Location 17,946,724 – 17,946,841
Length 117
Max. P 0.965955
window9050

overview

Window 0

Location 17,946,724 – 17,946,841
Length 117
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 86.89
Mean single sequence MFE -25.17
Consensus MFE -19.50
Energy contribution -19.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 0.77
SVM decision value 1.59
SVM RNA-class probability 0.965955
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17946724 117 + 20766785
AUAUUUAUGCUCGCAUAAAUACA-UUACAGUUUCUGGCAUGCAAAUUGCGUGCCAACUCCGUCUUCAUCAACAUCAUCUUCGCCAGCGCAUCUCGCAUCGUGCCGCUCACAGCCCGCA
.((((((((....))))))))..-..........((((((((.....))))))))..........................((..((((.....))...(((.....))).))..)). ( -26.70)
>DroSec_CAF1 4078 104 + 1
AUAUUUAUGCUCGCAUAAAUACAGUUACAGUUUCUGGCAUGCAAAUUGCGUGCCAACUCCGGCUCCAUCAACAUCAUCUUCGCCAGCGCAUCU--------------CACACCCCGCA
.((((((((....)))))))).............((((((((.....)))))))).....(((..................))).(((.....--------------.......))). ( -24.17)
>DroEre_CAF1 8831 110 + 1
AUAUUUAUGCUCGCAUAAAUACA-UUACAGUUUCUGGCAUGCAAAUUGCGUGCCAACUUCGGCUCCAUCAACAUCAUCUUCUCCAGCGCAUCUCGCAUCUCGCA-------GCUAGCA
.((((((((....))))))))..-.....(((..((((((((.....)))))))).(....).......))).............(((.....))).....((.-------....)). ( -23.80)
>DroYak_CAF1 8848 117 + 1
AUAUUUAUGCUCGCAUAAAUACA-UUACAGUUUCUGGCAUGCAAAUUGCGUGCCAACUCCGGCUCCAUCAACAUCAUCUUCUCCAGCGCAUCUCGCAUCUCGCAUCUCACUGCUCGCA
.((((((((....))))))))..-..........((((((((.....))))))))......((......................(((.....))).....(((......)))..)). ( -26.00)
>consensus
AUAUUUAUGCUCGCAUAAAUACA_UUACAGUUUCUGGCAUGCAAAUUGCGUGCCAACUCCGGCUCCAUCAACAUCAUCUUCGCCAGCGCAUCUCGCAUCUCGCA___CACAGCCCGCA
.((((((((....)))))))).............((((((((.....))))))))............................................................... (-19.50 = -19.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:53 2006