| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,944,852 – 17,944,979 |
| Length | 127 |
| Max. P | 0.558886 |
| Location | 17,944,852 – 17,944,943 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 97.27 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -18.46 |
| Energy contribution | -18.27 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17944852 91 + 20766785 A-UCCCCCGCCCACUUUUUUGUGGGCCCUGCGUCCUUGGACUUCCACUCAGUCUGUCGUGUUAAUUUUUUAUCACUUUGAAAUUAAAGAACA .-......((((((......)))))).....((.((((((((.......)))))...(((.(((....))).)))..........))).)). ( -19.90) >DroSec_CAF1 2197 91 + 1 A-UCCCCCGCCCACAGUUUUGUGGGUCCUGCGUCCUUGGACUUCCACUCAGUCUGUCGUGUUAAUUUUUUAUCACUUUGAAAUUAAAGAACA .-......((((((......)))))).....((.((((((((.......)))))...(((.(((....))).)))..........))).)). ( -17.60) >DroEre_CAF1 6967 91 + 1 A-UCCCCCGCCCACUUUUUUGUGGGUCCUGCGUCCUUGGACUUCCACUCAGUCUGUCGUGUUAAUUUUUUAUCACUUUGAAAUUAAAGAACA .-......((((((......)))))).....((.((((((((.......)))))...(((.(((....))).)))..........))).)). ( -17.80) >DroYak_CAF1 6807 92 + 1 ACUGCCCCGCCCACUUUUUUGUGGGUCCUGCGUCCUUGGACUUCCACUCAGUCUGUCGUGUUAAUUUUUUAUCACUUUGAAAUUAAAGAACA ...((...((((((......))))))...))((.((((((((.......)))))...(((.(((....))).)))..........))).)). ( -20.30) >consensus A_UCCCCCGCCCACUUUUUUGUGGGUCCUGCGUCCUUGGACUUCCACUCAGUCUGUCGUGUUAAUUUUUUAUCACUUUGAAAUUAAAGAACA ........((((((......)))))).....((.((((((((.......)))))...(((.(((....))).)))..........))).)). (-18.46 = -18.27 + -0.19)
| Location | 17,944,884 – 17,944,979 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -23.20 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17944884 95 - 20766785 AAAAUCGGUUGGACAACGGGGACAACGCCCAAGUGUUGUUCUUUAAUUUCAAAGUGAUAAAAAAUUAACACGACAGACUGAGUGGAAGUCCAAGG ....(((((((((....(((((((((((....)))))))))))....)))...(((.(((....))).)))....)))))).(((....)))... ( -23.20) >DroSec_CAF1 2229 95 - 1 AAAAUCGGUUGGACAACGGGGACAACGCCCAAGUGUUGUUCUUUAAUUUCAAAGUGAUAAAAAAUUAACACGACAGACUGAGUGGAAGUCCAAGG ....(((((((((....(((((((((((....)))))))))))....)))...(((.(((....))).)))....)))))).(((....)))... ( -23.20) >DroEre_CAF1 6999 95 - 1 AAAAUCGGUUGGACAACGGGGACAACGCCCAAGUGUUGUUCUUUAAUUUCAAAGUGAUAAAAAAUUAACACGACAGACUGAGUGGAAGUCCAAGG ....(((((((((....(((((((((((....)))))))))))....)))...(((.(((....))).)))....)))))).(((....)))... ( -23.20) >DroYak_CAF1 6840 95 - 1 AAAAUCGGUUGGACAACGGGGACAACGCCCAAGUGUUGUUCUUUAAUUUCAAAGUGAUAAAAAAUUAACACGACAGACUGAGUGGAAGUCCAAGG ....(((((((((....(((((((((((....)))))))))))....)))...(((.(((....))).)))....)))))).(((....)))... ( -23.20) >consensus AAAAUCGGUUGGACAACGGGGACAACGCCCAAGUGUUGUUCUUUAAUUUCAAAGUGAUAAAAAAUUAACACGACAGACUGAGUGGAAGUCCAAGG ....(((((((((....(((((((((((....)))))))))))....)))...(((.(((....))).)))....)))))).(((....)))... (-23.20 = -23.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:48 2006