| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,939,157 – 17,939,260 |
| Length | 103 |
| Max. P | 0.505506 |
| Location | 17,939,157 – 17,939,260 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.30 |
| Mean single sequence MFE | -36.63 |
| Consensus MFE | -31.51 |
| Energy contribution | -31.73 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17939157 103 - 20766785 UAC------GUUUUGAUGAAUCCACUUCAUGCAUAACUGAGCCGUGCGGUGCGACAGG-----------AAGCGGAAGCCCUAAAGUUGACAAUAGUUGGAAGCUGUCGCACUUGCUGGA ...------(((.(((((((.....))))).)).)))....(((.((((((((((((.-----------..((....)).......(..((....))..)...))))))))).)))))). ( -33.70) >DroEre_CAF1 1128 114 - 1 UUC------GUUUUGAUGAAUCCACUUCAUGCAUAACUGAGCCGUGCCGUGCGGCAGGAAGCGGCCAGGAAGCGGAAGCCCUAAAGUUGACAAUAGUUGGGAGCUGUCGCACUUGCCGGA (((------(((.(((((((.....))))).)).)))...(((((.....)))))..))).((((.((...(((..((((((((...(....)...))))).)))..))).)).)))).. ( -36.50) >DroYak_CAF1 759 109 - 1 UACGUCUUGGUUUUGAUGAAUCCACUUCAUGCAUAACUGAGCCGUGCGGUGCGACAGG-----------AAGCGGAAGCCCUAAAGUUGACAAUAGUUGGUAGCUGUCGCACUUGCCGCA .(((.((..(((.(((((((.....))))).)).)))..)).)))((((((((((((.-----------..((....)).......(..((....))..)...)))))))....))))). ( -39.70) >consensus UAC______GUUUUGAUGAAUCCACUUCAUGCAUAACUGAGCCGUGCGGUGCGACAGG___________AAGCGGAAGCCCUAAAGUUGACAAUAGUUGGAAGCUGUCGCACUUGCCGGA .........(((.(((((((.....))))).)).)))....(((.((((((((((((..............((....)).......(..((....))..)...))))))))).)))))). (-31.51 = -31.73 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:35 2006