Locus 5635

Sequence ID 2R_DroMel_CAF1
Location 17,936,547 – 17,936,641
Length 94
Max. P 0.943597
window9030

overview

Window 0

Location 17,936,547 – 17,936,641
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 88.09
Mean single sequence MFE -29.92
Consensus MFE -25.32
Energy contribution -25.43
Covariance contribution 0.11
Combinations/Pair 1.16
Mean z-score -2.60
Structure conservation index 0.85
SVM decision value 1.34
SVM RNA-class probability 0.943597
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17936547 94 + 20766785
CCAGCAGUGCCUGCCCAGUUGCUUCGAUCUCAACUACUUGGCCAGUGGCUUCUCCUUCCCGCUGGCCUCCAACAACUUCCAGCUGGCCAACGCG
......(((..((.(((((((....(....)........(((((((((..........)))))))))............))))))).)).))). ( -29.10)
>DroPse_CAF1 2963 94 + 1
GCAGCAGUGCCUGCCCAGCUGCUUCGACCUCAGCUACUUGGCCAGCGGCUUCUCCUUUCCCCUGGCCACUAGCAAAUUCCAGUUGGCCAAUCCU
((((......))))(((((((....(....).((((..(((((((.((...........))))))))).))))......)))))))........ ( -29.90)
>DroSec_CAF1 2932 94 + 1
CCAGCAGUGUCUGCCCAGCUGCUUCGAUCUCAACUACUUGGCCAGUGGCUUCUCCUUUCCGCUGGCCUCCAACAACUUCCAGGUGGCCAACGCG
......((((.((.(((.(((....(....)........(((((((((..........)))))))))............))).))).)))))). ( -28.60)
>DroEre_CAF1 2883 94 + 1
CCAAAAGUGCCUGCCCAGCUGCUUCGAUAUCAAUUACUUGGCCAGUGGCUUCUCCUUUCCGCUGGCCUCCAACGACUUUCAGCUGGCCAACCCG
...........((.(((((((..(((.((.....))...(((((((((..........))))))))).....)))....))))))).))..... ( -29.00)
>DroYak_CAF1 2879 94 + 1
CCAACAGUGCCUGCCCAGCUGCUUCGAUCUCAAUUACUUGGCCAGCGGCUUUUCCUUUCCGCUGGCCUCCAACAACUUUCAGCUGGCCAACGCG
......(((..((.(((((((....(....)........(((((((((..........)))))))))............))))))).)).))). ( -33.00)
>DroPer_CAF1 2961 94 + 1
GCAGCAGUGCCUGCCCAGCUGCUUCGACCUCAGCUACUUGGCCAGCGGCUUCUCCUUUCCCCUGGCCACUAGCAAAUUCCAGUUGGCCAAUCCU
((((......))))(((((((....(....).((((..(((((((.((...........))))))))).))))......)))))))........ ( -29.90)
>consensus
CCAGCAGUGCCUGCCCAGCUGCUUCGAUCUCAACUACUUGGCCAGCGGCUUCUCCUUUCCGCUGGCCUCCAACAACUUCCAGCUGGCCAACCCG
...........((.(((((((....(....)........(((((((((..........)))))))))............))))))).))..... (-25.32 = -25.43 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:34 2006