Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,932,091 – 17,932,211 |
Length | 120 |
Max. P | 0.633979 |
Location | 17,932,091 – 17,932,211 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.33 |
Mean single sequence MFE | -29.59 |
Consensus MFE | -15.55 |
Energy contribution | -14.33 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.64 |
Mean z-score | -1.60 |
Structure conservation index | 0.53 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17932091 120 - 20766785 UUCUCUUAGCUUGGCUUCUUUAUCUUCGAGCUGUUUUAGCUCACGGUUAUCCUUCAAAUCCCGUUCAACGGUCUGCUGAUUGGAGCACUCUGUUUUAAUUGUUUCCAGCUCAUCAGUUUU .......((((.((.............((((((...))))))((((...(((.(((.(..(((.....)))..)..)))..))).....))))...........)))))).......... ( -22.60) >DroVir_CAF1 4735 120 - 1 UUCGCUUAGUUCGGCUUCCUUUAACUGCAGCUGCUUCAACUCGCGAUUGUCCUUCAGAUCGCGCUCCAGGCUCUGUUGAUUGAGGCACUCGGUCUUGAGUGUUUCCAGCUGCUCGCUCUU ...(((......)))...........(((((((..(((((..((((((........))))))((.....))...)))))..((((((((((....)))))))))))))))))........ ( -39.00) >DroGri_CAF1 3692 120 - 1 UUCACUGAGUUUGCUUUGCUUCUGCUGCAGCUGCUUCAGCUCACGAUUAUCUUUAAGAUCGCGCUCCAGUGUCUCCUGAUUGAGGCAUUCUGUUUUAACAGAUUCCAGUUUCUCACUAGU .....((((...(((.((((((.((((.(((.((....))...(((((........))))).))).))))(((....))).)))))).(((((....)))))....)))..))))..... ( -28.40) >DroYak_CAF1 3358 120 - 1 UUCUCUUAACUUGGAUUCCUUAUCUUCGAGCUGUUUCAGCUCGCGGUUAUCCUUUAAAUCCCGUUCAACGGUCUGUUGAUUUGAGCACUCUGUUUUAAUUGUAUCCAGCUCGUCAGUUUU .......((((.((((.....)))).(((((((.....((((((((..............))))(((((.....)))))...))))((............))...)))))))..)))).. ( -22.94) >DroAna_CAF1 3373 120 - 1 UUCGCUUAGCUUGGAUUCCUUCUCCUGCAGUUGCUUCAGCUCGCGAUUAUCCUUCAAGUCUCGCUCCACGUUCUGCUGGUUGCGACACUCCGUCUUAAUGGACUCCACUUGCCCAGUCUU ...(((..((.((((.(((......((((((((...))))).)))((((.......(((.((((.(((.(.....))))..)))).)))......))))))).))))...))..)))... ( -26.62) >DroPer_CAF1 3536 120 - 1 UUUUCUCAGCUCUGUUUCGUUAUCCUGCAGCUGCUUAAGCUCGCGAUUGUCUUUCAGGUCGCGCUCAACGGUCUGCUGAUUAAGACACUCGGUGUUUACGCUUUCCAGUUGCAGGGUUUU .....................((((((((((((...((((...(((.((((((.(((..((.......))..)))......)))))).)))((....))))))..))))))))))))... ( -38.00) >consensus UUCUCUUAGCUUGGAUUCCUUAUCCUGCAGCUGCUUCAGCUCGCGAUUAUCCUUCAAAUCGCGCUCAACGGUCUGCUGAUUGAGGCACUCUGUUUUAAUUGUUUCCAGCUGCUCAGUUUU ..........................(((((((..(((((.((.((((........)))).))...........)))))(((((((.....))))))).......)))))))........ (-15.55 = -14.33 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:32 2006