| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,928,214 – 17,928,319 |
| Length | 105 |
| Max. P | 0.988336 |
| Location | 17,928,214 – 17,928,319 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -19.19 |
| Energy contribution | -19.67 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.71 |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.988336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17928214 105 - 20766785 AACAUUUCGCGUCAUUUUCAUGUUAGUGUUUGUAGAGUCAAGACAAUUUACAAGCGCUUUUGAAUGA---------------AUUAUUAUUUCGUUGAAUAUACAGUAAAUGAAAAUGGU ...........((((((((((...((((((((((((..........)))))))))))).((.(((((---------------(.......)))))).))..........)))))))))). ( -24.90) >DroSec_CAF1 4553 119 - 1 AACAUUUCGCGUCAUUUUCAUUUCAGUGUUUGUAGCGUGAUGU-AAUUUACAAGCGCUCUUGAAUGAUUAUUUUUUAAUGUGAUUAUGAUUAUUAUUAGUAUACAGUAAAUGGAAAUGCG .........((.(((((((((((((((((((((((.((.....-.)))))))))))))((..(((((((((..((......))..)))))))))...))......).))))))))))))) ( -26.70) >DroSim_CAF1 4555 119 - 1 AACAUUUCACGUCAUUUUCAUUUCAGUGUUUGUAGCGUGAUGU-CAUUUACAAGCGCUCUUGAAUGAUUAUUUAUUAAUGUGAUUAUAAUUAUUAUAAGUAUACAGAAAAUGGAAAUGCG .........((.(((((((((((((((((((((((.(((....-))))))))))))))(((((((((((((((((....))))..))))))))).))))......).))))))))))))) ( -30.00) >consensus AACAUUUCGCGUCAUUUUCAUUUCAGUGUUUGUAGCGUGAUGU_AAUUUACAAGCGCUCUUGAAUGAUUAUUU_UUAAUGUGAUUAUAAUUAUUAUAAGUAUACAGUAAAUGGAAAUGCG ............(((((((((((((((((((((((............))))))))))).....((((((((........))))))))..................).))))))))))).. (-19.19 = -19.67 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:31 2006