Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,921,963 – 17,922,065 |
Length | 102 |
Max. P | 0.738492 |
Location | 17,921,963 – 17,922,065 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -16.94 |
Energy contribution | -17.30 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -1.66 |
Structure conservation index | 0.62 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17921963 102 - 20766785 CCAAAGUCUAUUCGAUUCUGGAGAAGGCUCGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG----CUAAGUUCAAUCGCGUUAAUG (((.((((.....)))).))).(((((((.(((.((((.((.(((((((((....))))))))).....)))))).)))))----))...)))............. ( -29.70) >DroVir_CAF1 50892 93 - 1 CAAAGGUGUAUUCCAUUCUCGAAAAGGCGCGCUAUGUAAUGGACGAUCCCAAUUAUGGGAUUGUUAAAGCUCAUAGGUAGG----UU----UAAAGAUAAC----- ....((......))..(((..(((....((.(((((.....((((((((((....))))))))))......)))))))...----))----)..)))....----- ( -23.30) >DroSec_CAF1 39186 102 - 1 CAAAAGUCUAUUCCAUUCUGGAGAAGGCUCGAUAUGUGAUGGACGAUCCCAACUAUGCGAUUGUAAAGACGCACAGGUUAG----AUAAGUUCAAUCGCCUUAGUG ....(((((.((((.....)))).)))))......(((((((((.(((....((.((((.((....)).)))).))....)----))..)))).)))))....... ( -23.80) >DroEre_CAF1 39443 93 - 1 CUAAAGUCUAUUCAAUUCUGGAGAAGGCACGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG----AUAAGUUCAA---------UG ((((.((((.((((....))))..))))......((((.((.(((((((((....))))))))).....))))))..))))----..........---------.. ( -25.10) >DroYak_CAF1 40065 102 - 1 CCAAAGUCUAUUCGAUUCUGGAGAAGGCACGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG----AUGAGCUCAAUCGCGUUCAUG (((.((((.....)))).))).(((.((..(((.((((.((.(((((((((....))))))))).....)))))).))).(----((.......))))).)))... ( -32.30) >DroAna_CAF1 68837 105 - 1 CUAAGGUGUAUUCGAUUCUGGAGAAGGCCCGCUAUGUGAUGGACGAUCCUAACUACGGAAUCGUAAAAACACACAGGUUGGUUGCAUAAAUUCAAUUGACUUGAA- .....((((...((((((((.((.(((..((((((...)))).))..)))..)).)))))))).....)))).(((((..((((........))))..)))))..- ( -30.60) >consensus CAAAAGUCUAUUCGAUUCUGGAGAAGGCACGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG____AUAAGUUCAAUCGCCUU_AUG .....((((.(((.......))).))))......((((....(((((((((....))))))))).......))))............................... (-16.94 = -17.30 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:27 2006