Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,916,840 – 2,916,936 |
Length | 96 |
Max. P | 0.595321 |
Location | 2,916,840 – 2,916,936 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -16.78 |
Energy contribution | -17.42 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.15 |
Mean z-score | -1.84 |
Structure conservation index | 0.56 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2916840 96 + 20766785 CGUCGCCACCACCGCCGCCGCCAAAACUCUU-UGGCGACUCGGCGC-UCGCAAUCAACGAAGCGUUACACAAGCCAAGU--CGGCCGCAAUGGGCCCCAA .(..(((......((.(((((((((....))-))))((((.(((((-(((.......)).)))(.....)..))).)))--)))).))....)))..).. ( -34.20) >DroPse_CAF1 9358 79 + 1 U---------------GCCGCCGAAACUCUUUUGGCGACUCGUCGCCCCGCAAUCAACGAAGCGUUAC-CAAGCCAAGUCUCGGCCGCAAUGAGU----- (---------------((.(((((.(((....((((.......(((..((.......))..)))....-...))))))).))))).)))......----- ( -25.04) >DroSec_CAF1 6085 96 + 1 CAUUGCCACCACCGCCGCCGUCAAAACUCUU-UGGCGACUCGGCGC-UCGCAAUCAACGAAGCGUUACACAAGCCAAGU--CGGCCGCAAUGGGGCCCAA ....(((.(((..((.(((((((((....))-))))((((.(((((-(((.......)).)))(.....)..))).)))--)))).))..)))))).... ( -35.80) >DroSim_CAF1 6113 96 + 1 UGUUGCCACCACCGCCGCCGCCAAAACUCUU-UGGCGACUCGGCGC-UCGCAAUCAACGAAGCGUUACACAAGCCAAGU--CGGCCGCAAUGGGGCCCAA ....(((.(((..((.(((((((((....))-))))((((.(((((-(((.......)).)))(.....)..))).)))--)))).))..)))))).... ( -38.50) >DroEre_CAF1 6702 83 + 1 C------------ACCGACGCUAAAACUCUU-UGGCGACUCGGCGC-UCGCAAUCAUCGGAGCAUUACACAAGCCAAGU--CGG-CGCAAUGGGGCCCAA .------------......((((((....))-))))((((.(((((-((..........)))).((....))))).)))--)((-(.(....).)))... ( -23.30) >DroYak_CAF1 5797 84 + 1 C------------ACCGCCGCUUAAACUCUU-GGGCGAUUUGGCGC-UCGCAAUCAACGGAGCGUUACACAAGCCAACU--CGGCCGCAAUGGGGUCCAA .------------............((((((-((.(((.(((((((-((..........))))(.....)..))))).)--)).)))....))))).... ( -23.40) >consensus C____________GCCGCCGCCAAAACUCUU_UGGCGACUCGGCGC_UCGCAAUCAACGAAGCGUUACACAAGCCAAGU__CGGCCGCAAUGGGGCCCAA ................((.(((...(((....((((.....(((((.(((.......))).)))))......)))))))...))).))............ (-16.78 = -17.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:44 2006