| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,920,741 – 17,920,849 |
| Length | 108 |
| Max. P | 0.849703 |
| Location | 17,920,741 – 17,920,849 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.83 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.02 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17920741 108 - 20766785 UCACUACGAAACUGGAUCCCGAUCUCGUGAAAGCGUGCGAUAUCGCUCGGCUCCAUAUCCGAAAAUACGUUAACCCAUCGAUUUUCCAAAACCCCAAGAAACCA--ACCU-------- ............((((..((((...(((....))).(((....))))))).)))).....((((((.((.........))))))))..................--....-------- ( -18.70) >DroVir_CAF1 49799 90 - 1 ACACUAUGAAACUGGAUCACGGUCUCGUGAAAGCGUGCGUUAUCGCUCGGCUCCAUAUCCAAAAAUGCGCUAAUUUAUAUCC--------AAAUCCA---A----------------- ............(((((((((....))))).((((((((....)))..((........))......)))))........)))--------)......---.----------------- ( -19.10) >DroPse_CAF1 65286 96 - 1 UCAGUACGAAACUGGAUCACGUUCUCGUGAAAGCGUGCGUUACCGCUCGGCUCCAUAUCCGAAAAUACGUUAACCCAUCGCUUAACCAAAAUAC--------------CC-------- (((((.....))))).(((((....)))))(((((((.((((.((.((((........)))).....)).)))).)).)))))...........--------------..-------- ( -22.00) >DroGri_CAF1 50671 112 - 1 ACAUUAUGAAACUGGAUCACGUUCUCGUGAAAGCGUGCGUUAUCGCUCGGCUCCAUAUCCAAAAAUGCGCUAAUUUAUUUC----ACAAUAAUCCAAUCAACCA--ACAAAGUUAAGU ......(((...(((((((((....))))).((((((((....)))..((........))......)))))..........----.......)))).)))....--............ ( -20.00) >DroAna_CAF1 67655 109 - 1 ACACUACGAAACAGGAUCCCGAUCUCGUGAAAGCGUGCGUUAUCGCUCGGCUCCAUAUCCGAAAAUACGUUAACCCAUCGAUUUACCAAUAU-CCAUGAAACCACAACAA-------- .............((((....)))).(((..((((((((....)))((((........))))....)))))....(((.(((........))-).)))....))).....-------- ( -16.70) >DroPer_CAF1 65459 96 - 1 UCAGUACGAAACUGGAUCACGUUCUCGUGAAAGCGUGCGUUACCGCUCGGCUCCAUAUCCGAAAAUACGUUAACCCAUCGCUUAACCAAAAUAC--------------CC-------- (((((.....))))).(((((....)))))(((((((.((((.((.((((........)))).....)).)))).)).)))))...........--------------..-------- ( -22.00) >consensus ACACUACGAAACUGGAUCACGUUCUCGUGAAAGCGUGCGUUAUCGCUCGGCUCCAUAUCCGAAAAUACGUUAACCCAUCGCUU_ACCAAAAUACCAA___A_______CA________ .............((.(((((....))))).((((((((....)))((((........))))....)))))...)).......................................... (-14.24 = -14.02 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:26 2006