Locus 5627

Sequence ID 2R_DroMel_CAF1
Location 17,917,247 – 17,917,343
Length 96
Max. P 0.604565
window9020

overview

Window 0

Location 17,917,247 – 17,917,343
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 89.84
Mean single sequence MFE -10.51
Consensus MFE -7.74
Energy contribution -7.98
Covariance contribution 0.24
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.74
SVM decision value 0.14
SVM RNA-class probability 0.604565
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17917247 96 - 20766785
UGAUGCUAUCAAUUAAUAAACAUUAAUAUUUAUAAAACGCGCACUUGCGCUAUCAAUUCCCACAAAC--AAUAUUAAUCUUAAAUUUGUAUAUCCAUA
(((((......((((((....))))))...........((((....)))))))))............--............................. (  -9.80)
>DroSec_CAF1 34447 96 - 1
UGAUGCUAUCAAUGAAUAAACAUUAACAUUUAUAAAACGCGCACUUGCGCUAUCAAUUUCCACAAAC--AAUAUUAACCUUAAAUUUUUAUUCCCAUA
(((((.....((((......))))..............((((....)))))))))............--............................. (  -9.60)
>DroSim_CAF1 36835 96 - 1
UGAUGCUAUCAAUGAAUAAACAUUAACAUUUAUAAAACGCGCACUUGCGCUAUCAAUUUCCACAAAC--AAUAUUAACCUUAAAUUUUUAUUCCCAUA
(((((.....((((......))))..............((((....)))))))))............--............................. (  -9.60)
>DroEre_CAF1 34664 98 - 1
UGAUGCAAUCAAUGAAUAAACAUUAACAUUUAUAAAAAGCGCACUGGCGCUAUCAAUUCCCACAAACAUAAUAUUAAUCUUAAUUUAAAAUUCGCAUA
..((((....((((......)))).............(((((....)))))..........................................)))). ( -12.50)
>DroYak_CAF1 35362 98 - 1
UGACGCAAUCAAUGAAUAAACAUUAACAUUUAUAAAAAGCGCACUUGCGCUAUUAAUUCCCACAAACAUAAUAUUAAUCUUAAUUUAUAAUUCGUAUA
..(((.....((((......)))).....(((((((.(((((....)))))((((((...............)))))).....)))))))..)))... ( -11.06)
>consensus
UGAUGCUAUCAAUGAAUAAACAUUAACAUUUAUAAAACGCGCACUUGCGCUAUCAAUUCCCACAAAC__AAUAUUAAUCUUAAAUUUUUAUUCCCAUA
(((((.....((((......))))..............((((....)))))))))........................................... ( -7.74 =  -7.98 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:24 2006