Locus 5626

Sequence ID 2R_DroMel_CAF1
Location 17,907,159 – 17,907,251
Length 92
Max. P 0.740206
window9019

overview

Window 9

Location 17,907,159 – 17,907,251
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.80
Mean single sequence MFE -32.23
Consensus MFE -15.34
Energy contribution -15.37
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -3.03
Structure conservation index 0.48
SVM decision value 0.45
SVM RNA-class probability 0.740206
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17907159 92 + 20766785
CG---GCGGGCGAUUCGCCAGCGACGUUAAGUAAAUUGAUUCUUUAAUUGCCGAGAAUUGGUUACCAGUUGGCUUAACUCGCUUUUGCCCGC--------CGA
((---((((((((......(((((.((((((..(((..((((((........))))))..))).((....))))))))))))).))))))))--------)). ( -40.50)
>DroVir_CAF1 32133 102 + 1
CGGCAGCCGCCAAUUCGCCAGCUCUGUUAAGUAAAUUGAUUCUUUAAUUGUCGAGAAUUGGUUACGAGUUGGUUUAACUCGCUUUGCUGCUC-UGCGGCAUGC
..((((((((......((((((((.((......(((..((((((........))))))..))))))))))))).......((......))..-.))))).))) ( -32.30)
>DroPse_CAF1 50707 98 + 1
CG---GCAGCCAAUUCGCCAGCAACGUUAAGUAAAUUGAUUCUUUAAUUGUAGAGAAUUGGUUACGAGUUUGUUUAACUCGCUUUUGCCGGCUGCCU--UUGC
.(---((((((.....((.(((........((((.(..((((((((....))))))))..)))))(((((.....))))))))...)).))))))).--.... ( -34.00)
>DroMoj_CAF1 33897 96 + 1
CAUGAGCCGCCAAUUCGCCAGCUCAGUUCAGUAAAUUGAUUCUUUAAUUGUCAAGAAUUGGUUACGAGUUUGUUUAACUCGCUUUGCUGCUU-U------UGC
..(((((.((......))..)))))...((((((((..((((((........))))))..))).((((((.....))))))...)))))...-.------... ( -25.10)
>DroAna_CAF1 53404 98 + 1
CG---ACAGGCAAUUCGCCAGCAACGUUAAGUAAAUUGAUUCUUUAAUUGUCGAGAAUUGGUUACGAGUUGGUUUAACUCGCUUUUGCCGGCUGUCG--CUGA
((---((((.(.....((((((.((.....)).(((..((((((........))))))..)))....)))))).......((....)).).))))))--.... ( -27.50)
>DroPer_CAF1 50866 98 + 1
CG---GCAGCCAAUUCGCCAGCAACGUUAAGUAAAUUGAUUCUUUAAUUGUAGAGAAUUGGUUACGAGUUUGUUUAACUCGCUUUUGCCGGCUGCCU--UUGC
.(---((((((.....((.(((........((((.(..((((((((....))))))))..)))))(((((.....))))))))...)).))))))).--.... ( -34.00)
>consensus
CG___GCAGCCAAUUCGCCAGCAACGUUAAGUAAAUUGAUUCUUUAAUUGUCGAGAAUUGGUUACGAGUUGGUUUAACUCGCUUUUGCCCGC_G_C____UGC
...................(((........((((.(..((((((........))))))..)))))(((((.....)))))))).................... (-15.34 = -15.37 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:23 2006